| Literature DB >> 31906817 |
Byeong Woo Kim1, Su Kang Kim2, Kyung Wook Heo3, Ki Beom Bae4, Kyung Hwan Jeong5, Sang Ho Lee5, Tae Hee Kim6, Yeong Hoon Kim6, Sun Woo Kang6.
Abstract
Purpose: Epidermal growth factor (EGF) has been found to be associated with the development and repair mechanisms of several renal diseases. In this study, we hypothesized that single nucleotide polymorphisms (SNPs) in EGF or its receptor genes might have an association with end-stage renal disease (ESRD) or acute renal allograft rejection (AR) in a Korean population.Entities:
Keywords: Epidermal growth factor; end stage renal disease; epidermal growth factor receptor; graft rejection; kidney transplantation; single nucleotide polymorphism
Mesh:
Substances:
Year: 2020 PMID: 31906817 PMCID: PMC6968622 DOI: 10.1080/0886022X.2019.1710535
Source DB: PubMed Journal: Ren Fail ISSN: 0886-022X Impact factor: 2.606
Age and sex distribution of the study subjects.
| Age | 10–19 | 20–29 | 30–39 | 40–49 | 50–59 | 60–69 | ∼70 | Total |
|---|---|---|---|---|---|---|---|---|
| Control | ||||||||
| Male( | 35 | 38 | 36 | 37 | 11 | 157 | ||
| Female( | 28 | 25 | 35 | 34 | 10 | 132 | ||
| KT-NonAR | ||||||||
| Male( | 7 | 30 | 36 | 46 | 39 | 4 | 0 | 162 |
| Female( | 2 | 22 | 24 | 44 | 28 | 2 | 0 | 122 |
| KT-AR | ||||||||
| Male( | 1 | 9 | 13 | 15 | 5 | 3 | 0 | 46 |
| Female( | 0 | 3 | 6 | 7 | 1 | 0 | 0 | 17 |
KT: kidney transplantation; AR: acute rejection; n: number.
Age when underwent kidney transplantation.
Clinical characteristics of patients with and without acute rejection episodes.
| Non-AR | AR | ||
|---|---|---|---|
| Subject ( | 284 | 63 | |
| Age | 40.5 ± 11.5 | 39 ± 10.5 | .345 |
| Male (%) | 57.04% | 73.00% | .019 |
| Donor age | 39.4 ± 14 | 44.8 ± 13.7 | .012 |
| Deceased donors | 28.87% | 19.05% | .02 |
| HLA-mismatch (total number) | 3.2 ± 1.6 | 3.4 ± 1.2 | .416 |
| Calcineurin inhibitors | 98.94% | 98.41% | .738 |
| Cyclosporin-based regimen | 78.9% (172) | 21.1%(46) | .096 |
| Tacrolimus-based regimen | 86.3% (101) | 25.4% (16) | .099 |
| Basiliximab induction | 88.4% (167) | 11.6% (22) | .001 |
| Donor serum Cr (mg/dL) | 1.1 ± 0.6 | 0.9 ± 0.3 | .094 |
| Cause of ESRD | .929 | ||
| GN | 114 (40.1) | 27 (42.9) | |
| HTN | 78 (27.5) | 17 (27) | |
| DM | 31 (10.9) | 4 (6.3) | |
| PCKD | 5 (1.8) | 1 (1.6) | |
| Unknown | 43 (15.1) | 11 (17.5) | |
| Others | 13 (4.6) | 3 (4.8) |
AR: acute rejection; ESRD: end stage renal disease; DM: diabetes mellitus; HLA: human leukocyte antigen; HTN: hypertension; GN: glomerulonephritis; PCKD: polycystic kidney disease; n: number; Cr: creatinine.
Age when underwent kidney transplantation.
Genotype frequencies of polymorphisms of EGF gene in ESRD patients undergone kidney transplantation and controls.
| SNP | Genotype | Control | KT | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs11568835 | G/G | 195 (67.5%) | 222 (64%) | Codominant1 | 1.13 (0.80–1.59) | .50 |
| A/G | 85 (29.4%) | 109 (31.4%) | Codominant2 | 1.57 (0.68–3.61) | .30 | |
| A/A | 9 (3.1%) | 16 (4.6%) | Dominant | 1.15 (0.83–1.60) | .41 | |
| Recessive | 1.44 (0.62–3.31) | .39 | ||||
| Log-additive | 1.15 (0.87–1.53) | .32 | ||||
| rs11568943 | G/G | 193 (66.8%) | 220 (63.4%) | Codominant1 | 1.13 (0.81–1.59) | .48 |
| A/G | 86 (29.8%) | 111 (32%) | Codominant2 | 1.40 (0.62–3.17) | .41 | |
| A/A | 10 (3.5%) | 16 (4.6%) | Dominant | 1.17 (0.84–1.63) | .35 | |
| Recessive | 1.34 (0.60–3.00) | .48 | ||||
| Log-additive | 1.16 (0.88–1.53) | .3 | ||||
| rs2237051 | A/A | 131 (45.3%) | 169 (48.7%) | Codominant1 | 0.85 (0.61–1.17) | .32 |
| A/G | 132 (45.7%) | 144 (41.5%) | Codominant2 | 0.01 (0.58–1.77) | .96 | |
| G/G | 26 (9%) | 34 (9.8%) | Dominant | 0.86 (0.63–1.18) | .35 | |
| Recessive | 1.10 (0.64–1.88) | .74 | ||||
| Log-additive | 0.93 (0.73–1.19) | .58 | ||||
| rs11569017 | A/A | 184 (63.9%) | 216 (62.2%) | Codominant1 | 0.96 (0.69–1.33) | .80 |
| T/A | 104 (36.1%) | 117 (33.7%) | Codominant2 | NA (0.00–NA) | <.0001 | |
| T/T | 0 (0%) | 14 (4%) | Dominant | 1.09 (0.78–1.50) | .62 | |
| Recessive | NA (0.00–NA) | <.0001 | ||||
| Log-additive | 1.24 (0.92–1.67) | .16 | ||||
| rs3756261 | A/A | 188 (65%) | 217 (62.7%) | Codominant1 | 1.10 (0.78–1.53) | .62 |
| A/G | 89 (30.8%) | 112 (32.4%) | Codominant2 | 1.23 (0.57–2.64) | .60 | |
| G/G | 12 (4.2%) | 17 (4.9%) | Dominant | 1.12 (0.81–1.55) | .50 | |
| Recessive | 1.19 (0.56–2.53) | .66 | ||||
| Log-additive | 1.11 (0.84–1.45) | .47 |
EGF: epidermal growth factor; ESRD: end stage renal disease; KT: kidney transplantation.
Genotype frequencies of polymorphisms of EGFR gene in ESRD patients undergone kidney transplantation and controls.
| SNP | Genotype | Control | KT | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs1140475 | C/C | 255 (88.2%) | 315 (90.8%) | Codominant1 | 0.74 (0.44–1.23) | .25 |
| T/C | 34 (11.8%) | 31 (8.9%) | Codominant2 | NA (0.00–NA) | 1.00 | |
| T/T | 0 (0%) | 1 (0.3%) | Dominant | 0.76 (0.45–1.26) | .28 | |
| Recessive | NA (0.00–NA) | .28 | ||||
| Log-additive | 0.79 (0.48–1.30) | .35 | ||||
| rs2293347 | G/G | 128 (44.3%) | 153 (44.1%) | Codominant1 | 0.97 (0.70–1.35) | .86 |
| A/G | 132 (45.7%) | 153 (44.1%) | Codominant2 | 1.18 (0.70–2.01) | .54 | |
| A/A | 29 (10%) | 41 (11.8%) | Dominant | 1.01 (0.74–1.38) | .96 | |
| Recessive | 1.20 (0.73–2.00) | .47 | ||||
| Log-additive | 1.05 (0.83–1.32) | .71 | ||||
| rs1050171 | G/G | 221 (76.5%) | 264 (76.1%) | Codominant1 | 1.04 (0.71–1.51) | .85 |
| A/G | 63 (21.8%) | 78 (22.5%) | Codominant2 | 0.84 (0.24–2.92) | .78 | |
| A/A | 5 (1.7%) | 5 (1.4%) | Dominant | 1.01 (0.70–1.46) | .96 | |
| Recessive | 0.87 (0.25–3.04) | .82 | ||||
| Log-additive | 1.00 (0.71–1.39) | .99 | ||||
| rs6965469 | C/C | 179 (62.1%) | 233 (67.3%) | Codominant1 | 0.79 (0.56–1.10) | .16 |
| T/C | 101 (35.1%) | 103 (29.8%) | Codominant2 | 0.96 (0.37–2.48) | .93 | |
| T/T | 8 (2.8%) | 10 (2.9%) | Dominant | 0.81 (0.58–1.12) | .21 | |
| Recessive | 1.05 (0.41–2.70) | .92 | ||||
| Log-additive | 0.85 (0.64–1.14) | .28 |
EGFR: epidermal growth factor receptor; ESRD: end stage renal disease; KT: kidney transplantation.
Genotype frequencies of polymorphisms of EGF gene in kidney transplant patients with and without acute rejection episodes.
| SNP | Genotype | Non-AR | AR | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs11568835 | G/G | 175 (61.6%) | 47 (74.6%) | Codominant1 | 0.64 (0.34–1.20) | .16 |
| A/G | 93 (32.8%) | 16 (25.4%) | Codominant2 | 0.00 (0.00–NA) | .047 | |
| A/A | 16 (5.6%) | 0 (0%) | Dominant | 0.52 (0.28–0.97) | .034 | |
| Recessive | 0.00 (0.00–NA) | .0076 | ||||
| Log-additive | 0.50 (0.28–0.88) | .0099 | ||||
| rs11568943 | G/G | 181 (63.7%) | 39 (61.9%) | Codominant1 | 1.02 (0.56–1.85) | .95 |
| A/G | 91 (32%) | 20 (31.8%) | Codominant2 | 1.55 (0.47–5.05) | .47 | |
| A/A | 12 (4.2%) | 4 (6.3%) | Dominant | 1.10 (0.62–1.94) | .75 | |
| Recessive | 1.53 (0.47–4.95) | .5 | ||||
| Log-additive | 1.13 (0.71–1.80) | .6 | ||||
| rs2237051 | A/A | 140 (49.3%) | 29 (46%) | Codominant1 | 1.11 (0.63–1.99) | .72 |
| A/G | 117 (41.2%) | 27 (42.9%) | Codominant2 | 1.25 (0.50–3.15) | .63 | |
| G/G | 27 (9.5%) | 7 (11.1%) | Dominant | 1.08 (0.62–1.87) | .8 | |
| Recessive | 1.20 (0.49–2.93) | .69 | ||||
| Log-additive | 1.08 (0.72–1.64) | .7 | ||||
| rs11569017 | A/A | 178 (62.7%) | 38 (60.3%) | Codominant1 | 1.03 (0.57–1.85) | .94 |
| T/A | 96 (33.8%) | 21 (33.3%) | Codominant2 | 1.87 (0.56–6.30) | .31 | |
| T/T | 10 (3.5%) | 4 (6.3%) | Dominant | 1.15 (0.65–2.02) | .63 | |
| Recessive | 2.02 (0.60–6.78) | .28 | ||||
| Log-additive | 1.21 (0.76–1.95) | .43 | ||||
| rs3756261 | A/A | 180 (63.6%) | 37 (58.7%) | Codominant1 | 1.19 (0.66–2.14) | .56 |
| A/G | 90 (31.8%) | 22 (34.9%) | Codominant2 | 1.50 (0.46–4.85) | .50 | |
| G/G | 13 (4.6%) | 4 (6.3%) | Dominant | 1.26 (0.72–2.22) | .42 | |
| Recessive | 1.43 (0.45–4.60) | .56 | ||||
| Log-additive | 1.23 (0.78–1.94) | .37 |
EGF: epidermal growth factor; AR: acute rejection.
Genotype frequencies of polymorphisms of EGF gene in kidney transplant patients with and without acute rejection episodes adjusted by patient age, sex, donor age, deceased donor, cyclosporin, tacrolimus, basiliximab and HLA mismatch.
| SNP | Genotype | Non-AR | AR | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs11568835 | G/G | 124 (62.9%) | 38 (73.1%) | Dominant | 0.49 (0.24–1.02) | .05 |
| A/G | 59 (29.9%) | 14 (26.9%) | Recessive | 0.00 (0.00–NA) | .0014 | |
| A/A | 14 (7.1%) | 0 (0%) | Log-additive | 0.45 (0.24–0.85) | .0083 | |
| rs11568943 | G/G | 129 (65.5%) | 34 (65.4%) | Dominant | 0.94 (0.47–1.89) | .87 |
| A/G | 60 (30.5%) | 16 (30.8%) | Recessive | 1.28 (0.24–6.86) | .77 | |
| A/A | 8 (4.1%) | 2 (3.8%) | Log-additive | 0.99 (0.55–1.78) | .96 | |
| rs2237051 | A/A | 99 (50.2%) | 22 (42.3%) | Dominant | 1.25 (0.65–2.41) | .5 |
| A/G | 84 (42.6%) | 23 (44.2%) | Recessive | 2.29 (0.80–6.50) | .13 | |
| G/G | 14 (7.1%) | 7 (13.5%) | Log-additive | 1.36 (0.83–2.25) | .23 | |
| rs11569017 | A/A | 128 (65%) | 33 (63.5%) | Dominant | 1.06 (0.53–2.10) | .87 |
| T/A | 62 (31.5%) | 16 (30.8%) | Recessive | 2.16 (0.48–9.70) | .33 | |
| T/T | 7 (3.5%) | 3 (5.8%) | Log-additive | 1.15 (0.65–2.05) | .63 | |
| rs3756261 | A/A | 127 (64.5%) | 33 (63.5%) | Dominant | 0.96 (0.48–1.91) | .91 |
| A/G | 61 (31%) | 17 (32.7%) | Recessive | 1.07 (0.21–5.49) | .94 | |
| G/G | 9 (4.6%) | 2 (3.8%) | Log-additive | 0.98 (0.55–1.75) | .94 |
EGF: epidermal growth factor; AR: acute rejection; HLA: human leukocyte antigen.
Figure 1.LD block composed of SNPs of EGF and EGFR in kidney transplant patients with and without acute rejection episodes. Linkage disequilibrium block composed of single nucleotide polymorphisms of epidermal growth factor and epidermal growth factor receptor genes in kidney transplant patients with and without acute rejection episodes.
Haplotype analysis for association between the EGF gene cluster polymorphisms and acute renal allograft rejection.
| Haplotype | Haplotype | Non AR | AR | Case, Control | Chi square | |||
|---|---|---|---|---|---|---|---|---|
| + | − | + | − | |||||
| AA | 0.486 | 280 | 286 | 56 | 70 | 0.444, 0.495 | 1.042 | .3074 |
| GA | 0.305 | 170 | 396 | 41 | 85 | 0.325, 0.300 | 0.305 | .5808 |
| AT | 0.210 | 116 | 450 | 29 | 97 | 0.230, 0.205 | 0.395 | .5294 |
EGF: epidermal growth factor; AR: acute rejection.
Genotype frequencies of polymorphisms of EGFR gene in kidney transplant patients with and without acute rejection episodes.
| SNP | Genotype | Non-AR | AR | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs1140475 | C/C | 257 (90.5%) | 58 (92.1%) | Codominant1 | 0.85 (0.31–2.31) | .75 |
| T/C | 26 (9.2%) | 5 (7.9%) | Codominant2 | 0.00 (0.00–NA) | 1.00 | |
| T/T | 1 (0.4%) | 0 (0%) | Dominant | 0.77 (0.28–2.10) | .60 | |
| Recessive | 0.00 (0.00–NA) | .47 | ||||
| Log-additive | 0.75 (0.28–1.97) | .54 | ||||
| rs2293347 | G/G | 127 (44.7%) | 26 (41.3%) | Codominant1 | 1.01 (0.55–1.85) | .43 |
| A/G | 127 (44.7%) | 26 (41.3%) | Codominant2 | 1.00 (0.55–1.82) | 1.00 | |
| A/A | 30 (10.6%) | 11 (17.5%) | Dominant | 1.15 (0.66–2.01) | .62 | |
| Recessive | 1.68 (0.78–3.60) | .20 | ||||
| Log-additive | 1.23 (0.82–1.83) | .32 | ||||
| rs1050171 | G/G | 223 (78.5%) | 41 (65.1%) | Codominant1 | 2.14 (1.18–3.87) | .012 |
| A/G | 56 (19.7%) | 22 (34.9%) | Codominant2 | 0.00 (0.00–NA) | .60 | |
| A/A | 5 (1.8%) | 0 (0%) | Dominant | 1.86 (1.02–3.39) | .046 | |
| Recessive | 0.00 (0.00–NA) | .15 | ||||
| Log-additive | 1.55 (0.90–2.68) | .12 | ||||
| rs6965469 | C/C | 189 (66.8%) | 44 (69.8%) | Codominant1 | 0.73 (0.39–1.39) | .34 |
| T/C | 88 (31.1%) | 15 (23.8%) | Codominant2 | 2.86 (0.78–10.58) | .12 | |
| T/T | 6 (2.1%) | 4 (6.3%) | Dominant | 0.89 (0.49–1.62) | .71 | |
| Recessive | 3.80 (0.99–14.60) | .065 | ||||
| Log-additive | 1.08 (0.65–1.81) | .77 |
EGFR: epidermal growth factor receptor; AR: acute rejection.
Genotype frequencies of polymorphisms of EGFR gene in kidney transplant patients with and without acute rejection episodes adjusted by patient age, sex, donor age, deceased donor, cyclosporin, tacrolimus, basiliximab and HLA mismatch.
| SNP | Genotype | Non-AR | AR | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs1140475 | C/C | 174 (88.3%) | 48 (92.3%) | Dominant | 0.40 (0.12–1.33) | .11 |
| T/C | 22 (11.2%) | 4 (7.7%) | Recessive | 0.00 (0.00–NA) | .39 | |
| T/T | 1 (0.5%) | 0 (0%) | Log-additive | 0.41 (0.13–1.29) | .097 | |
| rs2293347 | G/G | 84 (42.6%) | 22 (42.3%) | Dominant | 1.08 (0.56–2.08) | .83 |
| A/G | 96 (48.7%) | 23 (44.2%) | Recessive | 2.23 (0.80–6.21) | .14 | |
| A/A | 17 (8.6%) | 7 (13.5%) | Log-additive | 1.25 (0.75–2.08) | .39 | |
| rs1050171 | G/G | 154 (78.2%) | 32 (61.5%) | Dominant | 2.74 (1.30–5.74) | .0082 |
| A/G | 41 (20.8%) | 20 (38.5%) | Recessive | 0.00 (0.00–NA) | .42 | |
| A/A | 2 (1%) | 0 (0%) | Log-additive | 2.40 (1.19–4.83) | .016 | |
| rs6965469 | C/C | 132 (67%) | 35 (67.3%) | Dominant | 1.03 (0.51–2.07) | .93 |
| T/C | 61 (31%) | 13 (25%) | Recessive | 2.93 (0.63–13.71) | .18 | |
| T/T | 4 (2%) | 4 (7.7%) | Log-additive | 1.18 (0.67–2.10) | .57 |
EGFR: epidermal growth factor receptor; AR: acute rejection; HLA: human leukocyte antigen.