| Literature DB >> 28043105 |
Su Kang Kim1, Hyun Kyung Park2, Han Sung Choi2, Koo Han Yoo3, Joo-Ho Chung1.
Abstract
PURPOSE: Recent studies have suggested that specific single-nucleotide polymorphisms (SNPs) contribute to the clinical features of benign prostatic hyperplasia (BPH). In this study, we investigated the relationships of genetic polymorphisms of the epidermal growth factor (EGF) gene and the epidermal growth factor receptor (EGFR) gene with BPH.Entities:
Keywords: Epidermal Growth Factor; Epidermal Growth Factor Receptor; Polymorphism, Genetic; Polymorphism, Single Nucleotide; Prostatic Hyperplasia
Year: 2016 PMID: 28043105 PMCID: PMC5209572 DOI: 10.5213/inj.1632538.269
Source DB: PubMed Journal: Int Neurourol J ISSN: 2093-4777 Impact factor: 2.835
Demographic and biochemical characteristics of the benign prostatic hyperplasia patients
| Characteristic | Value |
|---|---|
| No. of subject | 218 |
| Age (yr) | 65.6±10.3 |
| Prostate volume (mL) | 39.2±21.7 |
| < 30 | 97 (44.5) |
| ≥ 30 | 121 (55.5) |
| PSA (ng/mL) | 4.6±5.4 |
| < 1.5 | 75/217 (34.6) |
| ≥ 1.5 | 142/217 (65.4) |
| IPSS | 17.3±7.9 |
| 0–19 | 123/200 (61.5) |
| ≥ 20 | 77/200 (38.5) |
Values are presented as mean standard error or number (%).
PSA, prostate-specific antigen; IPSS, International Prostate Symptom Score.
Sequences for PCR
| SNPs | Sense primer | Antisense primer | PCR product size (bp) |
|---|---|---|---|
| EGF | |||
| rs3756261 | CGCCTGGCTAACTTTTTGTATT | TTACATGTCACCTGGGCTAATG | 360 |
| rs11568835 | ATCCAAACAGAACAGAGCTGTG | GCTCTGAACCCTTACAGGAGAA | 329 |
| rs11568943 | CACAGTGGCTCACACCTGTAAT | GGAAAATCAATTCTTCCTTGAC | 364 |
| rs2237051 | AGTCGGTGGCTCACTCATAACT | CAGCCAAGGAAAGACTGTGTAA | 351 |
| rs11569017 | CATCTTCAAACCCACTTGTGAA | CACTATAAATGGGGAGGTGGAG | 446 |
| EGFR | |||
| rs6965469 | GTTCAGCAAACCCATTCTTCTC | CCTGTGCATTCACTTAACAAGG | 352 |
| rs2293347 | AACAAAATTGGCAAACACACAG | GACACAGCTTGAGAGAGAGAGAGA | 323 |
| rs1050171 | CGCATTCATGCGTCTTCACCTG | ATGGCAAACTCTTGCTATCCCA | 368 |
PCR, polymerase chain reaction; SNP, single-nucleotide polymorphism; EGF, growth factor receptor; EGFR, epidermal growth factor receptor.
Genotype and allele distributions of tested SNPs in groups according to prostate volume
| SNP | Genotype | Prostate volume (mL), n (%) | Model | OR (95% CI) | P-value | P-value[ | |
|---|---|---|---|---|---|---|---|
| Allele | <30 | ≥30 | |||||
| EGF | A/A | 49 (50.5) | 75 (62.0) | Codominant1 | 0.70 (0.40–1.24) | 0.220 | |
| rs3756261 | A/G | 43 (44.3) | 42 (34.7) | Codominant2 | 0.55 (0.14–2.18) | 0.400 | 0.490 |
| -1744 | G/G | 5 (5.2) | 4 (3.3) | Dominant | 0.68 (0.39–1.19) | 0.180 | |
| Recessive | 0.64 (0.17–2.48) | 0.520 | 0.520 | ||||
| Log-additive | 0.72 (0.45–1.15) | 0.170 | |||||
| A | 141 (72.7) | 192 (79.3) | 1 | ||||
| G | 53 (27.3) | 50 (20.7) | 0.69 (0.45–1.08) | 0.110 | |||
| EGF | G/G | 63 (64.9) | 79 (65.3) | Codominant1 | 1.01 (0.56–1.85) | 0.960 | |
| rs11568835 | G/A | 28 (28.9) | 37 (30.6) | Codominant2 | 0.67 (0.19–2.30) | 0.520 | 0.550 |
| -1380 | A/A | 6 (6.2) | 5 (4.1) | Dominant | 0.95 (0.54–1.68) | 0.870 | 0.550 |
| Recessive | 0.66 (0.19–2.26) | 0.510 | |||||
| Log-additive | 0.91 (0.58–1.45) | 0.700 | |||||
| G | 154 (79.4) | 195 (80.6) | 1 | ||||
| A | 40 (20.6) | 47 (19.4) | 0.93 (0.58–1.49) | 0.760 | |||
| EGF | G/G | 50 (51.5) | 80 (66.1) | Codominant1 | 0.64 (0.36–1.14) | 0.130 | |
| rs11568943 | G/A | 42 (43.3) | 39 (32.2) | Codominant2 | 0.25 (0.05–1.37) | 0.110 | 0.120 |
| Arg431Lys | A/A | 5 (5.2) | 2 (1.6) | Dominant | 0.60 (0.34–1.04) | 0.070 | |
| Recessive | 0.30 (0.06–1.60) | 0.140 | 0.250 | ||||
| Log-additive | 0.60 (0.36–0.98) | 0.038[ | |||||
| G | 142 (73.2) | 199 (82.2) | 1 | ||||
| A | 52 (26.8) | 43 (17.8) | 0.59 (0.37–0.93) | 0.024[ | |||
| EGF | A/A | 47 (48.5) | 63 (52.1) | Codominant1 | 0.68 (0.39–1.20) | 0.190 | |
| rs2237051 | A/G | 47 (48.5) | 46 (38.0) | Codominant2 | 2.93 (0.77–11.09) | 0.110 | 0.160 |
| Met708Ile | G/G | 3 (3.1) | 12 (9.9) | Dominant | 0.82 (0.47–1.41) | 0.460 | |
| Recessive | 3.49 (0.95–12.86) | 0.040 | 0.060 | ||||
| Log-additive | 1.05 (0.68–1.63) | 0.830 | |||||
| A | 141 (72.7) | 172 (71.1) | 1 | ||||
| G | 53 (27.3) | 70 (28.9) | 1.08 (0.71–1.65) | 0.710 | |||
| EGF | A/A | 44 (45.4) | 75 (62.0) | Codominant1 | 0.57 (0.32–1.00) | 0.050 | |
| rs11569017 | A/T | 47 (48.5) | 42 (34.7) | Codominant2 | 0.40 (0.11–1.50) | 0.170 | 0.180 |
| Asp784Val | T/T | 6 (6.2) | 4 (3.3) | Dominant | 0.55 (0.32–0.95) | 0.031[ | |
| Recessive | 0.51 (0.14–1.88) | 0.300 | 0.350 | ||||
| Log-additive | 0.59 (0.37–0.95) | 0.028[ | |||||
| A | 135 (69.6) | 192 (79.3) | 1 | ||||
| T | 59 (30.4) | 50 (20.7) | 0.60 (0.39–0.92) | 0.020[ | |||
| EGFR | C/C | 63 (64.9) | 84 (69.4) | Codominant1 | 0.86 (0.47–1.57) | 0.620 | |
| rs6965469 | C/T | 29 (29.9) | 34 (28.1) | Codominant2 | 0.43 (0.10–1.88) | 0.260 | 0.300 |
| -2004 | T/T | 5 (5.2) | 3 (2.5) | Dominant | 0.79 (0.45–1.41) | 0.430 | |
| Recessive | 0.45 (0.10–1.95) | 0.280 | 0.470 | ||||
| Log-additive | 0.77 (0.47–1.26) | 0.300 | |||||
| C | 155 (79.9) | 202 (83.5) | 1 | ||||
| T | 39 (20.1) | 40 (16.5) | 0.79 (0.48–1.28) | 0.340 | |||
| EGFR | G/G | 44 (45.4) | 59 (48.8) | Codominant1 | 1.04 (0.58–1.85) | 0.890 | |
| rs2293347 | G/A | 41 (42.3) | 52 (42.9) | Codominant2 | 0.62 (0.24–1.59) | 0.320 | |
| Asp994Asp | A/A | 12 (12.4) | 10 (8.3) | Dominant | 0.94 (0.54–1.62) | 0.820 | |
| Recessive | 0.61 (0.25–1.50) | 0.280 | |||||
| Log-additive | 0.87 (0.58–1.31) | 0.510 | |||||
| G | 129 (66.5) | 170 (70.2) | 1 | ||||
| A | 65 (33.5) | 72 (29.8) | 0.84 (0.56–1.26) | 0.400 | |||
| EGFR | G/G | 75 (77.3) | 97 (80.2) | Codominant1 | 0.91 (0.47–1.78) | 0.800 | |
| rs1050171 | G/A | 21 (21.6) | 24 (19.8) | Codominant2 | 0.00 (0.00–NA) | 1.000 | 0.440 |
| Gln787Gln | A/A | 1 (1.1) | 0 (0.0) | Dominant | 0.88 (0.45–1.71) | 0.710 | |
| Recessive | 0.00 (0.00–NA) | 0.270 | 0.450 | ||||
| Log-additive | 0.85 (0.45–1.61) | 0.610 | |||||
| G | 171 (88.1) | 218 (90.1) | 1 | ||||
| A | 23 (11.9) | 24 (9.9) | 0.82 (0.45–1.50) | 0.520 | |||
SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval; EGF, growth factor receptor; EGFR, epidermal growth factor receptor.
P<0.05, statistically significant.
Fisher exact test.
Genotype and allele distributions of tested SNPs in groups according to PSA level
| SNP | Genotype | PSA (ng/mL), n (%) | Model | OR (95% CI) | P-value | P-value[ | |
|---|---|---|---|---|---|---|---|
| Allele | <1.5 | ≥1.5 | |||||
| EGF | A/A | 33 (44.0) | 91 (64.1) | Codominant1 | 0.48 (0.26-0.87) | 0.016[ | |
| rs3756261 | A/G | 38 (50.7) | 46 (32.4) | Codominant2 | 0.48 (0.12-1.91) | 0.300 | 0.260 |
| -1744 | G/G | 4 (5.3) | 5 (3.5) | Dominant | 0.48 (0.27-0.86) | 0.013[ | |
| Recessive | 0.66 (0.17-2.56) | 0.550 | 0.500 | ||||
| Log-additive | 0.56 (0.34-0.91) | 0.020[ | |||||
| A | 104 (69.3) | 228 (80.3) | 1 | ||||
| G | 46 (30.7) | 56 (19.7) | 0.56 (0.35-0.87) | 0.011[ | |||
| EGF | G/G | 47 (62.7) | 94 (66.2) | Codominant1 | 0.93 (0.50-1.76) | 0.830 | |
| rs11568835 | G/A | 22 (29.3) | 43 (30.3) | Codominant2 | 0.41 (0.12-1.43) | 0.160 | 0.190 |
| -1380 | A/A | 6 (8.0) | 5 (3.5) | Dominant | 0.82 (0.45-1.49) | 0.520 | |
| Recessive | 0.42 (0.12-1.44) | 0.170 | 0.200 | ||||
| Log-additive | 0.77 (0.48-1.25) | 0.290 | |||||
| G | 116 (77.3) | 231 (81.3) | 1 | ||||
| A | 34 (22.7) | 53 (18.7) | 0.78 (0.48-1.27) | 0.320 | |||
| EGF | G/G | 36 (48.0) | 94 (66.2) | Codominant1 | 0.52 (0.29-0.94) | 0.031[ | |
| rs11568943 | G/A | 36 (48.0) | 44 (31.0) | Codominant2 | 0.52 (0.11-2.46) | 0.410 | 0.410 |
| Arg431Lys | A/A | 3 (4.0) | 4 (2.8) | Dominant | 0.52 (0.29-0.93) | 0.027[ | |
| Recessive | 0.68 (0.15-3.15) | 0.620 | 0.700 | ||||
| Log-additive | 0.58 (0.35-0.97) | 0.036[ | |||||
| G | 108 (72.0) | 232 (81.7) | 1 | ||||
| A | 42 (28.0) | 52 (18.3) | 0.58 (0.36-0.92) | 0.021[ | |||
| EGF | A/A | 40 (53.3) | 70 (49.3) | Codominant1 | 1.01 (0.56-1.81) | 0.980 | |
| rs2237051 | A/G | 32 (42.7) | 60 (42.2) | Codominant2 | 2.23 (0.59-8.46) | 0.240 | 0.260 |
| Met708Ile | G/G | 3 (4.0) | 12 (8.4) | Dominant | 1.11 (0.63-1.96) | 0.720 | |
| Recessive | 2.22 (0.60-8.21) | 0.200 | 0.270 | ||||
| Log-additive | 1.21 (0.76-1.92) | 0.430 | |||||
| A | 112 (74.7) | 200 (70.4) | 1 | ||||
| G | 38 (25.3) | 84 (29.6) | 1.24 (0.79-1.94) | 0.350 | |||
| EGF | A/A | 33 (44.0) | 86 (60.6) | Codominant1 | 0.55 (0.30-0.99) | 0.050 | |
| rs11569017 | A/T | 38 (50.7) | 50 (35.2) | Codominant2 | 0.59 (0.15-2.24) | 0.440 | 0.470 |
| Asp784Val | T/T | 4 (5.3) | 6 (4.2) | Dominant | 0.55 (0.31-0.99) | 0.044[ | |
| Recessive | 0.77 (0.21-2.85) | 0.700 | 0.740 | ||||
| Log-additive | 0.64 (0.39-1.03) | 0.070 | |||||
| A | 104 (69.3) | 222 (78.2) | 1 | ||||
| T | 46 (30.7) | 62 (21.8) | 0.63 (0.40-0.99) | 0.044[ | |||
| EGFR | C/C | 47 (62.7) | 100 (70.4) | Codominant1 | 0.77 (0.41-1.46) | 0.430 | |
| rs6965469 | C/T | 23 (30.7) | 39 (27.5) | Codominant2 | 0.27 (0.06-1.16) | 0.080 | 0.120 |
| -2004 | T/T | 5 (6.7) | 3 (2.1) | Dominant | 0.68 (0.37-1.24) | 0.210 | |
| Recessive | 0.29 (0.07-1.24) | 0.090 | 0.130 | ||||
| C | 117 (78.0) | 239 (84.2) | Log-additive | 0.65 (0.39-1.08) 1 | 0.100 | ||
| T | 33 (22.0) | 45 (15.8) | 0.67 (0.41-1.10) | 0.110 | |||
| EGFR | G/G | 41 (54.7) | 61 (42.9) | Codominant1 | 1.61 (0.88-2.96) | 0.120 | |
| rs2293347 | G/A | 30 (40.0) | 63 (44.4) | Codominant2 | 3.20 (0.99-10.35) | 0.050 | 0.060 |
| Asp994Asp | A/A | 4 (5.3) | 18 (12.7) | Dominant | 1.81 (1.01-3.23) | 0.044[ | |
| Recessive | 2.56 (0.82-7.98) | 0.080 | 0.100 | ||||
| Log-additive | 1.70 (1.07-2.71) | 0.020 | |||||
| G | 112 (74.7) | 185 (65.1) | 1 | ||||
| A | 38 (25.3) | 99 (34.9) | 1.58 (1.01-2.45) | 0.043[ | |||
| EGFR | G/G | 55 (73.3) | 116 (81.7) | Codominant1 | 0.67 (0.34-1.32) | 0.250 | |
| rs1050171 | G/A | 19 (25.3) | 26 (18.3) | Codominant2 | 0.00 (0.00-NA) | 1.000 | 0.330 |
| Gln787Gln | A/A | 1 (1.4) | 0 (0.0) | Dominant | 0.64 (0.33-1.26) | 0.200 | |
| Recessive | 0.00 (0.00-NA) | 0.200 | 0.360 | ||||
| Log-additive | 0.62 (0.32-1.19) | 0.150 | |||||
| G | 129 (86.0) | 258 (90.8) | 1 | ||||
| A | 21 (14.0) | 26 (9.2) | 0.62 (0.34-1.14) | 0.130 | |||
SNP, single nucleotide polymorphism; PSA, prostate-specific antigen; OR, odds ratio; CI, confidence interval; EGF, growth factor receptor; EGFR, epidermal growth factor receptor.
P<0.05, statistically significant.
Fisher exact test.
Haplotype analysis in rs11568943, rs2237051, and rs11569017 of EGF gene
| Haplotype | Frequency | Group 1 | Group 2 | Chi-square | P-value | ||
|---|---|---|---|---|---|---|---|
| + | – | + | – | ||||
| Prostate volume (<30 mL) | Prostate volume (≥30 mL) | ||||||
| GAA | 0.468 | 82 | 112 | 122 | 120 | 2.869 | 0.090 |
| GGA | 0.280 | 53 | 141 | 69 | 173 | 0.077 | 0.780 |
| AAT | 0.215 | 52 | 142 | 42 | 200 | 5.679 | 0.017[ |
| GAT | 0.035 | 7 | 187 | 8 | 234 | 0.031 | 0.860 |
| PSA (< 1.5 ng/mL) | PSA (≥ 1.5 ng/mL) | ||||||
| GAA | 0.470 | 66 | 84 | 138 | 146 | 0.831 | 0.360 |
| GGA | 0.279 | 38 | 112 | 83 | 201 | 0.741 | 0.390 |
| AAT | 0.214 | 42 | 108 | 51 | 233 | 5.876 | 0.015[ |
| GAT | 0.035 | 4 | 146 | 11 | 273 | 0.424 | 0.520 |
PSA, prostate-specific antigen.
P<0.05, statistically significant.