| Literature DB >> 31903698 |
Alexander H Schmidt1,2,3, Jürgen Sauter1, Daniel M Baier1, Jessica Daiss1, Andreas Keller1, Anja Klussmeier2, Thilo Mengling1, Gabi Rall1, Tobias Riethmüller1, Gerhard Schöfl2, Ute V Solloch1, Tigran Torosian4, David Means5, Helen Kelly6, Latha Jagannathan7,8, Patrick Paul7, Anette S Giani9, Sabine Hildebrand1, Stephan Schumacher1, Jan Markert1, Monika Füssel2, Jan A Hofmann1, Thomas Schäfer2, Julia Pingel1, Vinzenz Lange2, Johannes Schetelig3,10.
Abstract
Currently, stem cell donor registries include more than 35 million potential donors worldwide to provide HLA-matched stem cell products for patients in need of an unrelated donor transplant. DKMS is a leading stem cell donor registry with more than 9 million donors from Germany, Poland, the United States, the United Kingdom, India and Chile. DKMS donors have donated hematopoietic stem cells more than 80,000 times. Many aspects of donor registry work are closely related to topics from immunogenetics or population genetics. In this two-part review article, we describe, analyse and discuss these areas of donor registry work by using the example of DKMS. Part 1 of the review gives a general overview on DKMS and includes typical donor registry activities with special focus on the HLA system: high-throughput HLA typing of potential stem cell donors, HLA haplotype frequencies and resulting matching probabilities, and donor file optimization with regard to HLA diversity.Entities:
Keywords: DKMS; HLA; donor registry; unrelated hematopoietic stem cell transplantation
Mesh:
Substances:
Year: 2020 PMID: 31903698 PMCID: PMC7003907 DOI: 10.1111/iji.12471
Source DB: PubMed Journal: Int J Immunogenet ISSN: 1744-3121 Impact factor: 1.466
Figure 1Number of registered DKMS donors by country and year. Germany: orange; United States: grey; Poland: yellow; United Kingdom: light blue; Chile: red; India: dark blue. Cut‐off date: 30 September 2019 [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 2Postcode areas in the United Kingdom. For each area, the number of DKMS donors is represented by the size of the corresponding pie chart. Slices of the pie charts indicate the area‐specific ethnic composition of the DKMS donor file. The share of donors of non‐European descent ranges from 0.3% (postcode area KW = Kirkwall) to 85.3% (HA = Harrow). Colouring of the areas indicates the ratio between DKMS donors and the total population. The proportion of registered donors ranges from 0.3% (postcode area HS = Outer Hebrides) to 3.2% (WR = Worcester). The map was created with QGIS 2.12 software (QGIS Development Team, 2015). Shapefile © 2015 by Open Door Logistics (http://www.opendoorlogistics.com) [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 3Two‐digit postcode areas in Germany. For each region, the number of DKMS donors is represented by the size of the corresponding pie chart. Slices of the pie charts indicate the area‐specific ethnic composition of the DKMS donor file. The share of donors of non‐German descent ranges from 1.2% (postcode area 08 = Plauen) to 22.1% (70 = Stuttgart). Colouring of the areas indicates the ratio between DKMS donors and the total population. The proportion of registered donors ranges from 3.8% (postcode area 06 = Halle (Saale)) to 15.0% (56 = Koblenz and 49 = Osnabrück). The map was created with QGIS 2.12 software (QGIS Development Team, 2015). Shapefile © 2015 by Open Door Logistics (http://www.opendoorlogistics.com) [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 4Number of stem cell donations by DKMS donors by country and year. Germany: orange; United States: grey; Poland: yellow; United Kingdom: light blue; Chile: red; India: dark blue. Cut‐off date: 30 September 2019 [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 5Typing costs at DKMS LSL by typing method. Red: HLA (6 loci at high resolution); grey: CCR5Δ32; green: ABO, Rh; purple: KIR (allele groups); blue: MICA/MICB; black: HLA‐E; yellow: CMV (from swabs) [Colour figure can be viewed at http://wileyonlinelibrary.com]
Overview on published haplotype frequency (HF) and/or matching probability (MP) estimations based on DKMS donors
| Country | Population | Sample size | Source | Remarks/Specific focus |
|---|---|---|---|---|
| Germany | German | 8,862 | Schmidt, Baier, et al. ( |
3‐ and 4‐locus HLA haplotypes at low resolution (LR) and high resolution (HR) Impact of matching requirements on matching probabilities (MP) |
| Germany | German | 319,009 | Schmidt et al. ( |
3‐locus HLA haplotypes at LR Regional HLA differences |
| Germany | German | 1,099,735 | Eberhard et al. ( |
3‐locus HLA haplotypes (class I at LR, class II at HR) Impact of selective HLA‐DRB1 typing (based on class I typing results) on HF estimations |
| Germany | German | 370,856 | Sauter et al. ( |
5‐locus HLA haplotypes at HR Impact of completeness of donor HLA typing on search success |
| Germany | German | 100,000 (20,000) | Figures 7, 9, S5; Table |
5‐locus HLA haplotypes at HR |
| Germany | Turkish | 9,086 | Schmidt, Solloch, et al. ( |
3‐locus HLA haplotypes at LR Impact of ethnic diversity recruitment efforts |
| Germany | Turkish | 100,000 | Figure |
5‐locus HLA haplotypes at HR |
| Germany | 17 minority populations | 1,028–33,083 | Pingel et al. ( |
4‐ and 5‐locus HLA haplotypes at HR Impact of population‐specific HF on individual donor searches |
| Germany, Poland, United States | 21 populations | 1,028–33,083 | Schmidt et al. ( |
4‐locus HLA haplotypes at HR Includes also non‐DKMS donors (from NMDP) Optimization of global donor recruitment efforts Sample size effects |
| Poland | Polish | 20,653 | Schmidt, Solloch, Pingel, et al. ( |
4‐locus HLA haplotypes at HR Validation of implementation of EM algorithm Impact of donor recruitment in Poland on MP for Polish patients |
| Poland | Polish | 123,749 | Schmidt et al. ( |
4‐locus HLA haplotypes at HR Regional HLA differences Sample size effects |
| Poland | Polish | 100,000 | Figure | 5‐locus HLA haplotypes at HR |
| United Kingdom | English/Scottish/Welsh | 100,000 (20,000) | Figures 7, 9, S5; Table | 5‐locus HLA haplotypes at HR |
| United Kingdom | English | 20,000 | Figure | 5‐locus HLA haplotypes at HR |
| United Kingdom | Indian | 20,000 | Figure | 5‐locus HLA haplotypes at HR |
| United Kingdom | Scottish | 20,000 | Figure | 5‐locus HLA haplotypes at HR |
| United Kingdom | Welsh | 20,000 | Figure | 5‐locus HLA haplotypes at HR |
| United States | European | 100,000 | Figure | 5‐locus HLA haplotypes at HR |
Figure 6Matching probabilities by donor registry size for various populations (all sample sizes n = 100,000). Red: Germany (country of recruitment), German (population); green: Germany, Turkish; orange: Poland, Polish; blue: United Kingdom, English/Scottish/Welsh; purple: United States, European [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 7Matching probabilities by donor registry size for various populations (all samples from DKMS UK donors, all sample sizes n = 20,000). Red: English; orange: Indian; blue: Scottish; green: Welsh [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 8Haplotype frequencies (HF) for two populations and two sample sizes. Red: Germany (country of recruitment), German (population); blue: United Kingdom, English/Scottish/Welsh. Solid: sample size n = 100,000; dashed: n = 20,000. Horizontal lines indicate HF that correspond to one (black), two (dark grey) or three (light grey) haplotype occurrence(s) in the samples with size n = 100,000 (solid) or n = 20,000 (dashed) [Colour figure can be viewed at http://wileyonlinelibrary.com]