| Literature DB >> 26876789 |
Jürgen Sauter1, Ute V Solloch1, Anette S Giani1, Jan A Hofmann1, Alexander H Schmidt1.
Abstract
The heterogeneous nature of HLA information in real-life stem cell donor registries may hamper unrelated donor searches. It is even possible that fully HLA-matched donors with incomplete HLA information are not identified. In our simulation study, we estimated the probability of these unnecessarily failed donor searches. For that purpose, we carried out donor searches in several virtual donor registries. The registries differed by size, composition with respect to HLA typing levels, and genetic diversity. When up to three virtual HLA typing requests were allowed within donor searches, the share of unnecessarily failed donor searches ranged from 1.19% to 4.13%, thus indicating that non-identification of completely HLA-matched stem cell donors is a problem of practical relevance. The following donor registry characteristics were positively correlated with the share of unnecessarily failed donor searches: large registry size, high genetic diversity, and, most strongly correlated, large fraction of registered donors with incomplete HLA typing. Increasing the number of virtual HLA typing requests within donor searches up to ten had a smaller effect. It follows that the problem of donor non-identification can be substantially reduced by complete high-resolution HLA typing of potential donors.Entities:
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Year: 2016 PMID: 26876789 PMCID: PMC4753406 DOI: 10.1038/srep21149
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Composition of virtual registries with respect to HLA typing profiles.
| Donor typing profile | HLA locus | Typing profiles (%) | ||||||
|---|---|---|---|---|---|---|---|---|
| A | B | C | DRB1 | DQB1 | Low data quality registry | Reference registry | High data quality registry | |
| #1 | H | H | H | H | H | 25 | 30 | 35 |
| #2 | H | H | H | — | — | 18 | 28 | 38 |
| #3 | L | L | — | H | — | 23 | 18 | 13 |
| #4 | L | L | — | — | — | 27 | 17 | 7 |
| #5 | L | L | — | — | — | 7 | 7 | 7 |
| Total | 100 | 100 | 100 | |||||
H = High-resolution typing, L = Low-resolution typing, – = not typed at all. Example: 23% of the donors of the low data quality registry have typing profile #3.
Top 20 haplotypes estimated from German donors (sample size: n = 370,856).
| Rank | Haplotype (HLA-A* ~ B* ~ C* ~ DRB1* ~ DQB1*) | Frequency (%) | Cumulated Frequency (%) |
|---|---|---|---|
| 1 | 01:01g‡ ~ 08:01g ~ 07:01g ~ 03:01 ~ 02:01g | 6.06 | 6.06 |
| 2 | 03:01g ~ 07:02g ~ 07:02g ~ 15:01 ~ 06:02 | 3.31 | 9.37 |
| 3 | 02:01g ~ 07:02g ~ 07:02g ~ 15:01 ~ 06:02 | 1.94 | 11.30 |
| 4 | 03:01g ~ 35:01g ~ 04:01g ~ 01:01 ~ 05:01 | 1.58 | 12.88 |
| 5 | 02:01g ~ 15:01g ~ 03:04g ~ 04:01 ~ 03:02g | 1.24 | 14.12 |
| 6 | 02:01g ~ 44:02g ~ 05:01g ~ 04:01 ~ 03:01g | 1.06 | 15.18 |
| 7 | 29:02g ~ 44:03 ~ 16:01 ~ 07:01 ~ 02:01g | 1.03 | 16.21 |
| 8 | 02:01g ~ 40:01g ~ 03:04g ~ 13:02 ~ 06:04g | 1.02 | 17.23 |
| 9 | 02:01g ~ 13:02g ~ 06:02g ~ 07:01 ~ 02:01g | 0.84 | 18.07 |
| 10 | 01:01g ~ 57:01g ~ 06:02g ~ 07:01 ~ 03:03g | 0.81 | 18.89 |
| 11 | 23:01g ~ 44:03g ~ 04:01g ~ 07:01 ~ 02:01g | 0.74 | 19.62 |
| 12 | 02:01g ~ 57:01g ~ 06:02g ~ 07:01 ~ 03:03g | 0.73 | 20.35 |
| 13 | 24:02g ~ 07:02g ~ 07:02g ~ 15:01 ~ 06:02 | 0.72 | 21.07 |
| 14 | 30:01g ~ 13:02g ~ 06:02g ~ 07:01 ~ 02:01g | 0.71 | 21.78 |
| 15 | 02:01g ~ 15:01g ~ 03:03g ~ 13:01g ~ 06:03g | 0.66 | 22.44 |
| 16 | 11:01g ~ 35:01g ~ 04:01g ~ 01:01 ~ 05:01 | 0.59 | 23.03 |
| 17 | 02:01g ~ 08:01g ~ 07:01g ~ 03:01 ~ 02:01g | 0.58 | 23.61 |
| 18 | 25:01g ~ 18:01g ~ 12:03g ~ 15:01 ~ 06:02 | 0.55 | 24.16 |
| 19 | 01:01g ~ 07:02g ~ 07:02g ~ 15:01 ~ 06:02 | 0.50 | 24.66 |
| 20 | 02:01g ~ 44:02g ~ 05:01g ~ 13:01g ~ 06:03g | 0.44 | 25.10 |
‡g groups were defined as described before16.
Effect size statistics and observed and expected homozygosities.
| Locus | Effect size statistics | Observed homozygosity | Expected homozygosity |
|---|---|---|---|
| HLA-A* | 0.0079 | 0.1563 | 0.1554 |
| HLA-B* | 0.0208 | 0.0798 | 0.0761 |
| HLA-C* | 0.0239 | 0.1559 | 0.1518 |
| HLA-DRB1* | 0.0202 | 0.1122 | 0.1136 |
| HLA-DQB1* | 0.0528 | 0.1907 | 0.1896 |
Figure 1Effect of donor registry size on donor search outcome.
The center column (2.6 M donors) shows results for the reference registry. All registries had the same typing profile composition and haplotype frequency distribution as the reference registry. Other parameters: Three typing requests per search were possible, Strategy A was applied.
Figure 2Success of typing requests with respect to donor typing profile.
Simulations were carried out using the reference registry. Error bars indicate standard deviations.
Figure 3Effect of donor search strategies and number of HLA typing requests.
Simulations were carried out using the reference registry. Error bars indicate standard deviations.
Figure 4Effect of typing profile distribution on donor search outcome.
For details regarding the registries with more high-resolution and low-resolution profiles see Methods section. All registries included 2.6 M donors and had the same haplotype frequency distribution as the reference registry. Other parameters: Three typing requests per search were possible, Strategy A was applied.
Figure 5Effect of haplotype frequency distribution of donor and patient populations on donor search outcome.
For details regarding the populations with more diverse and less diverse haplotype frequency distributions see Methods section. All registries included 2.6 M donors and had the same typing profile composition as the reference registry. Other parameters: Three typing requests per search were possible, Strategy A was applied.