Literature DB >> 31902344

Bioenergetic constraints on the origin of autotrophic metabolism.

Eric S Boyd1, Maximiliano J Amenabar1, Saroj Poudel1, Alexis S Templeton2.   

Abstract

Autotrophs form the base of all complex food webs and seemingly have done so since early in Earth history. Phylogenetic evidence suggests that early autotrophs were anaerobic, used CO2 as both an oxidant and carbon source, were dependent on H2 as an electron donor, and used iron-sulfur proteins (termed ferredoxins) as a primary electron carrier. However, the reduction potential of H2 is not typically low enough to efficiently reduce ferredoxin. Instead, in modern strictly anaerobic and H2-dependent autotrophs, ferredoxin reduction is accomplished using one of several recently evolved enzymatic mechanisms, including electron bifurcating and coupled ion translocating mechanisms. These observations raise the intriguing question of why anaerobic autotrophs adopted ferredoxins as central electron carriers only to have to evolve complex machinery to reduce them. Here, we report calculated reduction potentials for H2 as a function of observed environmental H2 concentration, pH and temperature. Results suggest that a combination of alkaline pH and high H2 concentration yield H2 reduction potentials low enough to efficiently reduce ferredoxins. Hyperalkaline, H2 rich environments have existed in discrete locations throughout Earth history where ultramafic minerals are undergoing hydration through the process of serpentinization. These results suggest that serpentinizing systems, which would have been common on early Earth, naturally produced conditions conducive to the emergence of H2-dependent autotrophic life. The primitive process of hydrogenotrophic methanogenesis is used to examine potential changes in methanogenesis and Fd reduction pathways as these organisms diversified away from serpentinizing environments. This article is part of a discussion meeting issue 'Serpentinite in the earth system'.

Entities:  

Keywords:  autotroph; ferredoxin; hydrogen; methanogen; serpentinization; ultramafic

Mesh:

Substances:

Year:  2020        PMID: 31902344      PMCID: PMC7015307          DOI: 10.1098/rsta.2019.0151

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  46 in total

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Review 2.  Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation.

Authors:  Wolfgang Buckel; Rudolf K Thauer
Journal:  Biochim Biophys Acta       Date:  2012-07-16

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5.  Stepwise [FeFe]-hydrogenase H-cluster assembly revealed in the structure of HydA(DeltaEFG).

Authors:  David W Mulder; Eric S Boyd; Ranjana Sarma; Rachel K Lange; James A Endrizzi; Joan B Broderick; John W Peters
Journal:  Nature       Date:  2010-04-25       Impact factor: 49.962

6.  The physiology and habitat of the last universal common ancestor.

Authors:  Madeline C Weiss; Filipa L Sousa; Natalia Mrnjavac; Sinje Neukirchen; Mayo Roettger; Shijulal Nelson-Sathi; William F Martin
Journal:  Nat Microbiol       Date:  2016-07-25       Impact factor: 17.745

7.  Origin of the pH dependence of the midpoint reduction potential in Clostridium pasteurianum ferredoxin:oxidation state-dependent hydrogen ion association.

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Journal:  J Biol Chem       Date:  1982-04-10       Impact factor: 5.157

8.  Oxidation-reduction properties of several low potential iron-sulfur proteins and of methylviologen.

Authors:  N A Stombaugh; J E Sundquist; R H Burris; W H Orme-Johnson
Journal:  Biochemistry       Date:  1976-06-15       Impact factor: 3.162

9.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

10.  Earliest signs of life on land preserved in ca. 3.5 Ga hot spring deposits.

Authors:  Tara Djokic; Martin J Van Kranendonk; Kathleen A Campbell; Malcolm R Walter; Colin R Ward
Journal:  Nat Commun       Date:  2017-05-09       Impact factor: 14.919

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  6 in total

1.  Serpentinite in the Earth system.

Authors:  Andrew M McCaig; Gretchen L Früh-Green; Peter Kelemen; Damon A H Teagle
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-01-06       Impact factor: 4.226

2.  Deep-branching acetogens in serpentinized subsurface fluids of Oman.

Authors:  Daniel R Colman; Emily A Kraus; Patrick H Thieringer; Kaitlin Rempfert; Alexis S Templeton; John R Spear; Eric S Boyd
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-10       Impact factor: 12.779

3.  Molecular Evidence for an Active Microbial Methane Cycle in Subsurface Serpentinite-Hosted Groundwaters in the Samail Ophiolite, Oman.

Authors:  Emily A Kraus; Daniel Nothaft; Blake W Stamps; Kaitlin R Rempfert; Eric T Ellison; Juerg M Matter; Alexis S Templeton; Eric S Boyd; John R Spear
Journal:  Appl Environ Microbiol       Date:  2021-01-04       Impact factor: 4.792

4.  Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an Origin for MerA Among Thermophilic Archaea.

Authors:  Christos A Christakis; Tamar Barkay; Eric S Boyd
Journal:  Front Microbiol       Date:  2021-06-23       Impact factor: 5.640

5.  Energy at Origins: Favorable Thermodynamics of Biosynthetic Reactions in the Last Universal Common Ancestor (LUCA).

Authors:  Jessica L E Wimmer; Joana C Xavier; Andrey D N Vieira; Delfina P H Pereira; Jacqueline Leidner; Filipa L Sousa; Karl Kleinermanns; Martina Preiner; William F Martin
Journal:  Front Microbiol       Date:  2021-12-13       Impact factor: 5.640

6.  Proteomic Analysis of Methanococcus voltae Grown in the Presence of Mineral and Nonmineral Sources of Iron and Sulfur.

Authors:  Katherine F Steward; Devon Payne; Will Kincannon; Christina Johnson; Malachi Lensing; Hunter Fausset; Brigitta Németh; Eric M Shepard; William E Broderick; Joan B Broderick; Jen Dubois; Brian Bothner
Journal:  Microbiol Spectr       Date:  2022-07-25
  6 in total

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