Literature DB >> 31889182

Understanding the nature and scope of clinical research commentaries in PubMed.

James R Rogers1, Hollis Mills1, Lisa V Grossman1, Andrew Goldstein2, Chunhua Weng1.   

Abstract

Scientific commentaries are expected to play an important role in evidence appraisal, but it is unknown whether this expectation has been fulfilled. This study aims to better understand the role of scientific commentary in evidence appraisal. We queried PubMed for all clinical research articles with accompanying comments and extracted corresponding metadata. Five percent of clinical research studies (N = 130 629) received postpublication comments (N = 171 556), resulting in 178 882 comment-article pairings, with 90% published in the same journal. We obtained 5197 full-text comments for topic modeling and exploratory sentiment analysis. Topics were generally disease specific with only a few topics relevant to the appraisal of studies, which were highly prevalent in letters. Of a random sample of 518 full-text comments, 67% had a supportive tone. Based on our results, published commentary, with the exception of letters, most often highlight or endorse previous publications rather than serve as a prominent mechanism for critical appraisal.
© The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  PubMed; publishing; scientific commentary; scientific communication; topic modeling

Year:  2020        PMID: 31889182      PMCID: PMC7025356          DOI: 10.1093/jamia/ocz209

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  30 in total

1.  Postpublication criticism and the shaping of clinical knowledge.

Authors:  Richard Horton
Journal:  JAMA       Date:  2002-06-05       Impact factor: 56.272

2.  External validity of randomised controlled trials: "to whom do the results of this trial apply?".

Authors:  Peter M Rothwell
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3.  Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

Authors:  Halil Kilicoglu
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

Review 4.  What is the role of 'the letter to the editor'?

Authors:  E Tierney; C O'Rourke; J E Fenton
Journal:  Eur Arch Otorhinolaryngol       Date:  2014-09-18       Impact factor: 2.503

5.  Citation Sentiment Analysis in Clinical Trial Papers.

Authors:  Jun Xu; Yaoyun Zhang; Yonghui Wu; Jingqi Wang; Xiao Dong; Hua Xu
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

6.  What Makes Journal Club Effective?-A Survey of Orthopaedic Residents and Faculty.

Authors:  Sean T Campbell; Jason R Kang; Julius A Bishop
Journal:  J Surg Educ       Date:  2017-08-17       Impact factor: 2.891

7.  Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Authors:  Peter J A Cock; Tiago Antao; Jeffrey T Chang; Brad A Chapman; Cymon J Cox; Andrew Dalke; Iddo Friedberg; Thomas Hamelryck; Frank Kauff; Bartek Wilczynski; Michiel J L de Hoon
Journal:  Bioinformatics       Date:  2009-03-20       Impact factor: 6.937

8.  A stronger post-publication culture is needed for better science.

Authors:  Hilda Bastian
Journal:  PLoS Med       Date:  2014-12-30       Impact factor: 11.069

Review 9.  Evaluation of the Cochrane tool for assessing risk of bias in randomized clinical trials: overview of published comments and analysis of user practice in Cochrane and non-Cochrane reviews.

Authors:  Lars Jørgensen; Asger S Paludan-Müller; David R T Laursen; Jelena Savović; Isabelle Boutron; Jonathan A C Sterne; Julian P T Higgins; Asbjørn Hróbjartsson
Journal:  Syst Rev       Date:  2016-05-10

10.  A Framework for Improving the Quality of Research in the Biological Sciences.

Authors:  Arturo Casadevall; Lee M Ellis; Erika W Davies; Margaret McFall-Ngai; Ferric C Fang
Journal:  mBio       Date:  2016-08-30       Impact factor: 7.867

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