| Literature DB >> 31881834 |
Mobin Rezanejad1, Sepideh Karimi2, Hassan Momtaz3.
Abstract
BACKGROUND: Trueperella pyogenes is one of the most clinically imperative bacteria responsible for severe cases of mastitis and metritis, particularly in postpartum dairy cows. The bacterium has emergence of antibiotic resistance and virulence characters. The existing research was done to apprise the phenotypic and genotypic evaluation of antibiotic resistance and characterization of virulence factors in the T. pyogenes bacteria of bovine mastitis and metritis in postpartum cows.Entities:
Keywords: Antibiotic resistance pattern; Mammary infection; Trueperella pyogenes; Uterine infection; Virulence factors
Mesh:
Substances:
Year: 2019 PMID: 31881834 PMCID: PMC6935153 DOI: 10.1186/s12866-019-1630-4
Source DB: PubMed Journal: BMC Microbiol ISSN: 1471-2180 Impact factor: 3.605
List of primers and PCR conditions used for amplification of antibiotic resistance genes in the T. pyogenes bacteria isolated from samples of mastitis and metritis [14–18]
| Target gene | Primer sequence (5′-3′) | PCR product (bp) | PCR programs | PCR volume (50 μL) |
|---|---|---|---|---|
| Class 1 intI | F: CCTCCCGCACGATGATC | 280 | 1 cycle: | 5 μL PCR buffer 10X |
| R: TCCACGCATCGTCAGGC | 95 0C ------------ 3 min | 2 mM Mgcl2 | ||
| Class 1 cassette | F: GGCATCCAAGCAGCAAG R: AAGCAGACTTGACCTGA | Unpredictable | 35 cycle: 94 0C ------------ 60 s | 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R |
58 0C ------------ 60 s 72 0C ------------ 60 s 1 cycle: 72 0C ------------ 5 min | 1.5 U Taq DNA polymerase (Fermentas) 1 μL DNA template | |||
| Class 2 intI | F: TTATTGCTGGGATTAGGC R: ACGGCTACCCTCTGTTATC | 233 | 1 cycle: 94 0C ------------ 4 min. 35 cycle: 94 0C ------------ 60 s 56 0C ------------ 60 s 72 0C ------------ 45 s 1 cycle: 72 0C ------------ 7 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1 U Taq DNA polymerase (Fermentas) 1.5 μL DNA template |
| tetW | F: GACAACGAGAACGGACACTATG R: CGCAATAGCCAGCAATGAACGC | 1843 | 1 cycle: 94 0C ------------ 2 min. 35 cycle: 94 0C ------------ 60 s 55 0C ------------ 60 s 72 0C ------------ 60 min 1 cycle: 72 0C ------------ 5 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
| ermX | F:GTTGCGCTCTAACCGCTAAGGC R:CCATGGGGACCACTGAGCCGTC | 571/657 | 1 cycle: 94 0C ------------ 2 min. 35 cycle: 94 0C ------------ 60 s 55 0C ------------ 60 s 72 0C ------------ 60 min 1 cycle: 72 0C ------------ 6 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
| ermB | F: GAAATTGGAACAGGTAAAGG R: TTTACTTTTGGTTTAGGATG | 404 | 1 cycle: 94 0C ------------ 60 s. 35 cycle: 94 0C ------------ 60 s 53 0C ------------ 60 s 72 0C ------------ 60 s 1 cycle: 72 0C ------------ 5 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
List of primers and PCR conditions used for amplification of virulence factors in the T. pyogenes bacteria isolated from samples of mastitis and metritis [19, 20]
| Target gene | Primer sequence (5′-3′) | PCR product (bp) | PCR programs | PCR volume (50 μL) |
|---|---|---|---|---|
| nanH | F: CGCTAGTGCTGTAGCGTTGTTAAGT R: CCGAGGAGTTTTGACTGACTTTGT | 781 | 1 cycle: 94 0C ------------ 3 min. 35 cycle: 94 0C ------------ 60 s 60 0C ------------ 60 s 72 0C ------------ 3 min 1 cycle: 72 0C ------------ 7 min | 5 μL PCR buffer 10X 1.5 mM Mgcl2 200 μM dNTP (Fermentas) 0.5 μM of each primers F & R 1.25 U Taq DNA polymerase (Fermentas) 2.5 μL DNA template |
| nanP | F: TTGAGCGTACGCAGCTCTTC R: CCACGAAATCGGCCTTATTG | 150 | ||
| cbpA | F: GCAGGGTTGGTGAAAGAGTTTACT R: GCTTGATATAACCTTCAGAATTTGCA | 124 | ||
| fimC | F: TGTCGAAGGTGACGTTCTTCG R: CAAGGTCACCGAGACTGCTGG | 843 | ||
| plo | F: GGCCCGAATGTCACCGC R: AACTCCGCCTCTAGCGC | 270 | 1 cycle: 94 0C ------------ 2 min 35 cycle: 94 0C ------------ 60 s 55 0C ------------ 60 s 72 0C ------------ 60 s 1 cycle: 72 0C ------------ 5 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
| fimA | F: CACTACGCTCACCATTCACAAG R: GCTGTAATCCGCTTTGTCTGTG | 605 | 1 cycle: 94 0C ------------ 3 min. 35 cycle: 94 0C ------------ 60 s 57 0C ------------ 60 s 72 0C ------------ 3 min 1 cycle: 72 0C ------------ 7 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
| fimG | F: ACG CTT CAG AAG GTC ACC AGG R: ATC TTG ATC TGC CCC CAT GCG | 929 | ||
| fimE | F: GCCCAGGACCGAGAGCGAGGGC R: GCCTTCACAAATAACAGCAACC | 775 | 1 cycle: 94 0C ------------ 3 min. 35 cycle: 94 0C ------------ 60 s 55 0C ------------ 60 s 72 0C ------------ 3 min 1 cycle: 72 0C ------------ 7 min | 5 μL PCR buffer 10X 2 mM Mgcl2 150 μM dNTP (Fermentas) 0.75 μM of each primers F & R 1.5 U Taq DNA polymerase (Fermentas) 3 μL DNA template |
Phenotypic pattern of antibiotic resistance amongst the T. pyogenes bacteria isolated from samples of mastitis and metritis in cow
| Types of samples (N. positive) | Antibiotic resistance pattern (%) | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rifampicin | Streptomycin | Azithromycin | Tylosin | Cefalexin | Trimethoprim-sulfamethoxazole | Lincomycin | Tetracycline | Ciprofloxacin | Enrofloxacin | Penicillin | Amoxicillin | Ampicillin | Erythromycin | Gentamicin | |
| Mastitis (32) | 19 (59.37) | 26 (81.25) | 12 (37.50) | 20 (62.50) | 27 (84.37) | 28 (87.50) | 14 (43.75) | 17 (53.12) | 17 (53.12) | 19 (59.37) | 32 (100) | 28 (87.50) | 29 (90.62) | 17 (53.12) | 32 (100) |
| Metritis (41) | 28 (68.29) | 23 (56.09) | 19 (46.34) | 26 (63.41) | 40 (97.56) | 29 (70.73) | 24 (58.53) | 20 (48.78) | 29 (70.73) | 30 (73.17) | 40 (97.56) | 41 (100) | 41 (100) | 16 (39.02) | 40 (97.56) |
Genotypic pattern of antibiotic resistance amongst the T. pyogenes bacteria isolated from samples of mastitis and metritis in cow
| Types of samples (N. positive) | Antibiotic resistance genes (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Mastitis (32) | 18 (56.25) | 10 (31.25) | 14 (43.75) | 16 (50) | 12 (37.50) | 14 (43.75) | 18 (56.25) | 26 (81.25) | 28 (87.50) |
| Metritis (41) | 20 (48.78) | 14 (34.14) | 18 (43.90) | 20 (48.78) | 18 (43.90) | 19 (46.34) | 17 (41.46) | 20 (48.78) | 22 (53.65) |
Distribution of virulence factors amongst the T. pyogenes bacteria isolated from samples of mastitis and metritis in cow
| Types of samples (N. positive) | Virulence factors (%) | |||||||
|---|---|---|---|---|---|---|---|---|
| Mastitis (32) | 32 (100) | 2 (6.25) | 24 (75) | 25 (78.12) | 32 (100) | 6 (18.75) | 27 (84.37) | 20 (62.50) |
| Metritis (41) | 41 (100) | 30 (73.17) | 38 (92.68) | 32 (78.04) | 41 (100) | 26 (63.41) | 38 (92.68) | 40 (97.56) |