Literature DB >> 31880185

Transcription initiation in mycobacteria: a biophysical perspective.

Hande Boyaci1, Ruth M Saecker1, Elizabeth A Campbell1.   

Abstract

Recent biophysical studies of mycobacterial transcription have shed new light on this fundamental process in a group of bacteria that includes deadly pathogens such as Mycobacterium tuberculosis (Mtb), Mycobacterium abscessus (Mab), Mycobacterium leprae (Mlp), as well as the nonpathogenic Mycobacterium smegmatis (Msm). Most of the research has focused on Mtb, the causative agent of tuberculosis (TB), which remains one of the top ten causes of death globally. The enzyme RNA polymerase (RNAP) is responsible for all bacterial transcription and is a target for one of the crucial antibiotics used for TB treatment, rifampicin (Rif). Here, we summarize recent biophysical studies of mycobacterial RNAP that have advanced our understanding of the basic process of transcription, have revealed novel paradigms for regulation, and thus have provided critical information required for developing new antibiotics against this deadly disease.

Entities:  

Keywords:  Mycobacterium tuberculosis ; antibiotics; biophysical studies; mycobacterial RNA polymerase; transcription initiation

Year:  2019        PMID: 31880185      PMCID: PMC7549741          DOI: 10.1080/21541264.2019.1707612

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  64 in total

1.  Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex.

Authors:  Katsuhiko S Murakami; Shoko Masuda; Elizabeth A Campbell; Oriana Muzzin; Seth A Darst
Journal:  Science       Date:  2002-05-17       Impact factor: 47.728

2.  The RNA polymerase-binding protein RbpA confers basal levels of rifampicin resistance on Streptomyces coelicolor.

Authors:  Katy V Newell; Derek P Thomas; Dimitris Brekasis; Mark S B Paget
Journal:  Mol Microbiol       Date:  2006-05       Impact factor: 3.501

3.  Structure and function of CarD, an essential mycobacterial transcription factor.

Authors:  Devendra B Srivastava; Katherine Leon; Joseph Osmundson; Ashley L Garner; Leslie A Weiss; Lars F Westblade; Michael S Glickman; Robert Landick; Seth A Darst; Christina L Stallings; Elizabeth A Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

Review 4.  Local and global regulation of transcription initiation in bacteria.

Authors:  Douglas F Browning; Stephen J W Busby
Journal:  Nat Rev Microbiol       Date:  2016-08-08       Impact factor: 60.633

5.  Domains within RbpA Serve Specific Functional Roles That Regulate the Expression of Distinct Mycobacterial Gene Subsets.

Authors:  Jerome Prusa; Drake Jensen; Gustavo Santiago-Collazo; Steven S Pope; Ashley L Garner; Justin J Miller; Ana Ruiz Manzano; Eric A Galburt; Christina L Stallings
Journal:  J Bacteriol       Date:  2018-06-11       Impact factor: 3.490

6.  CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence.

Authors:  Christina L Stallings; Nicolas C Stephanou; Linda Chu; Ann Hochschild; Bryce E Nickels; Michael S Glickman
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

Review 7.  Analysis of RNA polymerase-promoter complex formation.

Authors:  Wilma Ross; Richard L Gourse
Journal:  Methods       Date:  2008-10-24       Impact factor: 3.608

8.  Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding.

Authors:  Hande Boyaci; James Chen; Rolf Jansen; Seth A Darst; Elizabeth A Campbell
Journal:  Nature       Date:  2019-01-09       Impact factor: 49.962

9.  Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA.

Authors:  Elizabeth A Hubin; Allison Fay; Catherine Xu; James M Bean; Ruth M Saecker; Michael S Glickman; Seth A Darst; Elizabeth A Campbell
Journal:  Elife       Date:  2017-01-09       Impact factor: 8.140

10.  Structural basis for bacterial transcription-coupled DNA repair.

Authors:  Alexandra M Deaconescu; Anna L Chambers; Abigail J Smith; Bryce E Nickels; Ann Hochschild; Nigel J Savery; Seth A Darst
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

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  5 in total

Review 1.  The Context-Dependent Influence of Promoter Sequence Motifs on Transcription Initiation Kinetics and Regulation.

Authors:  Drake Jensen; Eric A Galburt
Journal:  J Bacteriol       Date:  2021-03-23       Impact factor: 3.490

2.  The antibiotic sorangicin A inhibits promoter DNA unwinding in a Mycobacterium tuberculosis rifampicin-resistant RNA polymerase.

Authors:  Mirjana Lilic; James Chen; Hande Boyaci; Nathaniel Braffman; Elizabeth A Hubin; Jennifer Herrmann; Rolf Müller; Rachel Mooney; Robert Landick; Seth A Darst; Elizabeth A Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

3.  Mycobacterium tuberculosis DNA repair helicase UvrD1 is activated by redox-dependent dimerization via a 2B domain cysteine.

Authors:  Ankita Chadda; Drake Jensen; Eric J Tomko; Ana Ruiz Manzano; Binh Nguyen; Timothy M Lohman; Eric A Galburt
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-22       Impact factor: 12.779

4.  Spatial relationships of intra-lesion heterogeneity in Mycobacterium tuberculosis microenvironment, replication status, and drug efficacy.

Authors:  Richard C Lavin; Shumin Tan
Journal:  PLoS Pathog       Date:  2022-03-28       Impact factor: 6.823

5.  Rhodobacter sphaeroides CarD Negatively Regulates Its Own Promoter.

Authors:  Kemardo K Henry; Wilma Ross; Richard L Gourse
Journal:  J Bacteriol       Date:  2021-08-09       Impact factor: 3.490

  5 in total

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