Literature DB >> 31876640

Characterization of a TP53 Somatic Variant of Unknown Function From an Ovarian Cancer Patient Using Organoid Culture and Computational Modeling.

Jianling Bi1, Kristina W Thiel1, Jacob M Litman2, Yuping Zhang1, Eric J Devor1,3, Andreea M Newtson1, Michael J Schnieders4,5, Jesus Gonzalez Bosquet1, Kimberly K Leslie1,3.   

Abstract

In our proof-of-concept study of 1 patient with stage IIIC carcinosarcoma of the ovary, we discovered a rare mutation in the tumor suppressor, TP53, that results in the deletion of N131. Immunofluorescence imaging of the organoid culture revealed hyperstaining of p53 protein. Computational modeling suggests this residue is important for maintaining protein conformation. Drug screening identified the combination of a proteasome inhibitor with a histone deacetylase inhibitor as the most effective treatment. These data provide evidence for the successful culture of a patient tumor and analysis of drug response ex vivo.

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Year:  2020        PMID: 31876640      PMCID: PMC7521672          DOI: 10.1097/GRF.0000000000000516

Source DB:  PubMed          Journal:  Clin Obstet Gynecol        ISSN: 0009-9201            Impact factor:   1.966


  31 in total

Review 1.  The missing zinc: p53 misfolding and cancer.

Authors:  Stewart N Loh
Journal:  Metallomics       Date:  2010-05-18       Impact factor: 4.526

2.  Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values.

Authors:  Chresten R Søndergaard; Mats H M Olsson; Michał Rostkowski; Jan H Jensen
Journal:  J Chem Theory Comput       Date:  2011-06-09       Impact factor: 6.006

3.  Structural Insights into Hearing Loss Genetics from Polarizable Protein Repacking.

Authors:  Mallory R Tollefson; Jacob M Litman; Guowei Qi; Claire E O'Connell; Matthew J Wipfler; Robert J Marini; Hernan V Bernabe; William T A Tollefson; Terry A Braun; Thomas L Casavant; Richard J H Smith; Michael J Schnieders
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

4.  Establishment and characterization of a new cell line (SKS) from neuroendocrine small cell carcinoma of the uterine cervix and its chemosensitivity.

Authors:  Y Saga; M Suzuki; N Tamura; M Ohwada; I Sato
Journal:  Oncology       Date:  2001       Impact factor: 2.935

5.  Mutational landscape of uterine and ovarian carcinosarcomas implicates histone genes in epithelial-mesenchymal transition.

Authors:  Siming Zhao; Stefania Bellone; Salvatore Lopez; Durga Thakral; Carlton Schwab; Diana P English; Jonathan Black; Emiliano Cocco; Jungmin Choi; Luca Zammataro; Federica Predolini; Elena Bonazzoli; Mark Bi; Natalia Buza; Pei Hui; Serena Wong; Maysa Abu-Khalaf; Antonella Ravaggi; Eliana Bignotti; Elisabetta Bandiera; Chiara Romani; Paola Todeschini; Renata Tassi; Laura Zanotti; Franco Odicino; Sergio Pecorelli; Carla Donzelli; Laura Ardighieri; Fabio Facchetti; Marcella Falchetti; Dan-Arin Silasi; Elena Ratner; Masoud Azodi; Peter E Schwartz; Shrikant Mane; Roberto Angioli; Corrado Terranova; Charles Matthew Quick; Babak Edraki; Kaya Bilgüvar; Moses Lee; Murim Choi; Amy L Stiegler; Titus J Boggon; Joseph Schlessinger; Richard P Lifton; Alessandro D Santin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-10       Impact factor: 11.205

6.  Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer.

Authors:  Yongheng Chen; Raja Dey; Lin Chen
Journal:  Structure       Date:  2010-02-10       Impact factor: 5.006

7.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

8.  Patient-derived organoids model treatment response of metastatic gastrointestinal cancers.

Authors:  Georgios Vlachogiannis; Somaieh Hedayat; Alexandra Vatsiou; Yann Jamin; Javier Fernández-Mateos; Khurum Khan; Andrea Lampis; Katherine Eason; Ian Huntingford; Rosemary Burke; Mihaela Rata; Dow-Mu Koh; Nina Tunariu; David Collins; Sanna Hulkki-Wilson; Chanthirika Ragulan; Inmaculada Spiteri; Sing Yu Moorcraft; Ian Chau; Sheela Rao; David Watkins; Nicos Fotiadis; Maria Bali; Mahnaz Darvish-Damavandi; Hazel Lote; Zakaria Eltahir; Elizabeth C Smyth; Ruwaida Begum; Paul A Clarke; Jens C Hahne; Mitchell Dowsett; Johann de Bono; Paul Workman; Anguraj Sadanandam; Matteo Fassan; Owen J Sansom; Suzanne Eccles; Naureen Starling; Chiara Braconi; Andrea Sottoriva; Simon P Robinson; David Cunningham; Nicola Valeri
Journal:  Science       Date:  2018-02-23       Impact factor: 47.728

Review 9.  The consequence of oncomorphic TP53 mutations in ovarian cancer.

Authors:  Pavla Brachova; Kristina W Thiel; Kimberly K Leslie
Journal:  Int J Mol Sci       Date:  2013-09-23       Impact factor: 5.923

10.  Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket.

Authors:  Mohan R Pradhan; Jia Wei Siau; Srinivasaraghavan Kannan; Minh N Nguyen; Zohra Ouaray; Chee Keong Kwoh; David P Lane; Farid Ghadessy; Chandra S Verma
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

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  5 in total

Review 1.  The role of patient-derived ovarian cancer organoids in the study of PARP inhibitors sensitivity and resistance: from genomic analysis to functional testing.

Authors:  Mengyu Tao; Xia Wu
Journal:  J Exp Clin Cancer Res       Date:  2021-10-26

2.  Blocking autophagy overcomes resistance to dual histone deacetylase and proteasome inhibition in gynecologic cancer.

Authors:  Jianling Bi; Yuping Zhang; Paige K Malmrose; Haley A Losh; Andreea M Newtson; Eric J Devor; Kristina W Thiel; Kimberly K Leslie
Journal:  Cell Death Dis       Date:  2022-01-17       Impact factor: 8.469

3.  Successful Patient-Derived Organoid Culture of Gynecologic Cancers for Disease Modeling and Drug Sensitivity Testing.

Authors:  Jianling Bi; Andreea M Newtson; Yuping Zhang; Eric J Devor; Megan I Samuelson; Kristina W Thiel; Kimberly K Leslie
Journal:  Cancers (Basel)       Date:  2021-06-10       Impact factor: 6.639

4.  Genomic characterization of five commonly used endometrial cancer cell lines.

Authors:  Eric J Devor; Jesus Gonzalez-Bosquet; Kristina W Thiel; Kimberly K Leslie
Journal:  Int J Oncol       Date:  2020-10-21       Impact factor: 5.650

5.  Advantages of Tyrosine Kinase Anti-Angiogenic Cediranib over Bevacizumab: Cell Cycle Abrogation and Synergy with Chemotherapy.

Authors:  Jianling Bi; Garima Dixit; Yuping Zhang; Eric J Devor; Haley A Losh; Andreea M Newtson; Kristen L Coleman; Donna A Santillan; Thorsten Maretzky; Kristina W Thiel; Kimberly K Leslie
Journal:  Pharmaceuticals (Basel)       Date:  2021-07-16
  5 in total

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