Literature DB >> 31874387

Structural glycobiology in the age of electron cryo-microscopy.

Mihaela Atanasova1, Haroldas Bagdonas1, Jon Agirre2.   

Abstract

The methodology underpinning the construction, refinement, validation and analysis of atomic models of glycoproteins and protein-carbohydrate complexes has received a long-overdue boost in the last five years. This is a very timely development, as the resolution revolution in electron cryo-microscopy is now routinely delivering structures of key glycomedical importance, with a three-dimensional precision where X-ray crystallographic methods have traditionally floundered. This review will focus on the new software developments that have been introduced in the past two years, and their impact on the field of structural glycobiology in terms of published structures.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31874387     DOI: 10.1016/j.sbi.2019.12.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  6 in total

1.  Assessing the Mobility of Severe Acute Respiratory Syndrome Coronavirus-2 Spike Protein Glycans by Structural and Computational Methods.

Authors:  Soledad Stagnoli; Francesca Peccati; Sean R Connell; Ane Martinez-Castillo; Diego Charro; Oscar Millet; Chiara Bruzzone; Asis Palazon; Ana Ardá; Jesús Jiménez-Barbero; June Ereño-Orbea; Nicola G A Abrescia; Gonzalo Jiménez-Osés
Journal:  Front Microbiol       Date:  2022-04-15       Impact factor: 5.640

2.  Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed.

Authors:  Robbie P Joosten; Robert A Nicholls; Jon Agirre
Journal:  Curr Med Chem       Date:  2022       Impact factor: 4.740

3.  Updated restraint dictionaries for carbohydrates in the pyranose form.

Authors:  Mihaela Atanasova; Robert A Nicholls; Robbie P Joosten; Jon Agirre
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-03-04       Impact factor: 7.652

4.  Carbohydrate-Protein Interactions: Advances and Challenges.

Authors:  Shuang Zhang; Kyle Yu Chen; Xiaoqin Zou
Journal:  Commun Inf Syst       Date:  2021

Review 5.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

6.  Leveraging glycomics data in glycoprotein 3D structure validation with Privateer.

Authors:  Haroldas Bagdonas; Daniel Ungar; Jon Agirre
Journal:  Beilstein J Org Chem       Date:  2020-10-09       Impact factor: 2.883

  6 in total

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