Literature DB >> 34366717

Carbohydrate-Protein Interactions: Advances and Challenges.

Shuang Zhang1, Kyle Yu Chen2, Xiaoqin Zou1.   

Abstract

A carbohydrate, also called saccharide in biochemistry, is a biomolecule consisting of carbon (C), hydrogen (H) and oxygen (O) atoms. For example, sugars are low molecular-weight carbohydrates, and starches are high molecular-weight carbohydrates. Carbohydrates are the most abundant organic substances in nature and essential constituents of all living things. Protein-carbohydrate interactions play important roles in many biological processes, such as cell growth, differentiation, and aggregation. They also have broad applications in pharmaceutical drug design. In this review, we will summarize the characteristic features of protein-carbohydrate interactions and review the computational methods for structure prediction, energy calculations, and kinetic studies of protein-carbohydrate complexes. Finally, we will discuss the challenges in this field.

Entities:  

Keywords:  Carbohydrate-protein interactions; drug discovery; molecular docking; saccharide-protein interactions; structure prediction; sugar-protein binding

Year:  2021        PMID: 34366717      PMCID: PMC8336717          DOI: 10.4310/cis.2021.v21.n1.a7

Source DB:  PubMed          Journal:  Commun Inf Syst        ISSN: 1526-7555


  69 in total

1.  Elucidation of the mechanism of interaction of sheep spleen galectin-1 with splenocytes and its role in cell-matrix adhesion.

Authors:  R Ramkumar; S K Podder
Journal:  J Mol Recognit       Date:  2000 Sep-Oct       Impact factor: 2.137

2.  A fast flexible docking method using an incremental construction algorithm.

Authors:  M Rarey; B Kramer; T Lengauer; G Klebe
Journal:  J Mol Biol       Date:  1996-08-23       Impact factor: 5.469

3.  Characterization of binding interactions by isothermal titration calorimetry.

Authors: 
Journal:  Curr Opin Biotechnol       Date:  1997-02-01       Impact factor: 9.740

4.  Protein-carbohydrate interactions defining substrate specificity in Bacillus 1,3-1,4-beta-D-glucan 4-glucanohydrolases as dissected by mutational analysis.

Authors:  K Piotukh; V Serra; R Borriss; A Planas
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

5.  Molecular dynamics simulations of galectin-1-oligosaccharide complexes reveal the molecular basis for ligand diversity.

Authors:  Michael G Ford; Thomas Weimar; Thies Köhli; Robert J Woods
Journal:  Proteins       Date:  2003-11-01

6.  Hydrogen-bonding pattern of methyl beta-lactoside binding to the Ricinus communis lectins.

Authors:  D Solís; P Fernández; T Díaz-Mauriño; J Jiménez-Barbero; M Martín-Lomas
Journal:  Eur J Biochem       Date:  1993-06-15

7.  Assessing the Performance of MM/PBSA, MM/GBSA, and QM-MM/GBSA Approaches on Protein/Carbohydrate Complexes: Effect of Implicit Solvent Models, QM Methods, and Entropic Contributions.

Authors:  Sushil K Mishra; Jaroslav Koča
Journal:  J Phys Chem B       Date:  2018-08-15       Impact factor: 2.991

8.  Docking glycosaminoglycans to proteins: analysis of solvent inclusion.

Authors:  Sergey A Samsonov; Joan Teyra; M Teresa Pisabarro
Journal:  J Comput Aided Mol Des       Date:  2011-05-20       Impact factor: 3.686

9.  Real-time and label-free analysis of binding thermodynamics of carbohydrate-protein interactions on unfixed cancer cell surfaces using a QCM biosensor.

Authors:  Xueming Li; Siyu Song; Qi Shuai; Yihan Pei; Teodor Aastrup; Yuxin Pei; Zhichao Pei
Journal:  Sci Rep       Date:  2015-09-15       Impact factor: 4.379

Review 10.  Structural glycobiology: a game of snakes and ladders.

Authors:  Mari L DeMarco; Robert J Woods
Journal:  Glycobiology       Date:  2008-04-04       Impact factor: 4.313

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