| Literature DB >> 31872978 |
Wei Yang1,2, Fenghui Ma3, Li Wang1,4, Xue He1,4, Hengxun Zhang1,2, Jianwen Zheng1,5, Yuhe Wang1,6, Tianbo Jin1,4,7, Dongya Yuan1,4, Yongjun He1,4.
Abstract
AIMS: Stroke is a complicated neurological disease and the second leading cause of death in the world. We aimed to investigate the association between CYP24A1 genetic polymorphisms and ischemic stroke risk.Entities:
Keywords: zzm321990CYP24A1zzm321990; genetic polymorphisms; ischemic stroke
Year: 2019 PMID: 31872978 PMCID: PMC7010572 DOI: 10.1002/brb3.1503
Source DB: PubMed Journal: Brain Behav Impact factor: 2.708
Basic characteristic of individuals in this study
| Variables | Cases ( | Controls ( |
|
|---|---|---|---|
| Age, years (mean ± | 64.13 ± 10.82 | 63.69 ± 6.69 | .443 |
| >64 | 73.39 ± 5.88 | 70.03 ± 4.48 | |
| ≤64 | 55.58 ± 6.38 | 59.35 ± 3.91 | |
| Gender | |||
| Male | 316 (66%) | 313 (65%) | .785 |
| Female | 161 (34%) | 167 (35%) | |
| Histology | |||
| Cerebral infarct | 360 (75%) | 0.645 | |
| Lacunar infarct | 117 (21%) | ||
| Hypertension | 340 (71%) | 0.362 | |
| Normal tension | 137 (29%) | ||
| Coronary disease | 103 (22%) | 0.020 | |
| Noncoronary disease | 374 (78%) | ||
| Triglycerides (mmol/L) | 1.61 ± 0.96 | 1.80 ± 1.40 | .142 |
| Total cholesterol (mmol/L) | 3.94 ± 1.02 | 5.50 ± 7.90 | .020 |
| HDL (mmol/L) | 1.18 ± 0.32 | 1.19 ± 0.30 | .696 |
| LDL (mmol/L) | 1.87 ± 0.60 | 2.69 ± 0.73 |
|
p < .05 indicates statistical significance.
Abbreviations: HDL, high‐density lipoprotein; LDL, low‐density lipoprotein.
Student's t test is used.
Pearson's χ2 test is used.
The distribution of allele frequencies of CYP24A1 SNPs in case and control
| SNP ID | Alleles (minor/major) | MAF | O (HET) | E (HET) |
| OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs2762934 | A/G | 0.103 | 0.097 | 0.189 | 0.195 | .487 | 1.07 (0.81–1.42) | .630 |
| rs1570669 | A/G | 0.228 | 0.238 | 0.472 | 0.475 | .923 | 0.86 (0.71–1.03) | .102 |
| rs6068816 | T/C | 0.229 | 0.221 | 0.437 | 0.442 | .837 | 1.12 (0.93–1.36) | .234 |
| rs2296241 | A/G | 0.245 | 0.248 | 0.530 | 0.496 | .142 | 0.91 (0.76–1.09) | .285 |
Abbreviations: E (HET), expected heterozygosity; HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; O (HET), observed heterozygosity; SNP, single‐nucleotide polymorphisms.
p < .05 are excluded;
p values were calculated by two‐sided χ2, p < .05 indicates statistical significance.
The SNPs of CYP24A1 gene association with ischemic stroke risk
| SNP | Genotype | Case | Control | Adjusted analysis | Crude analysis | ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||||
| rs2762934 | GG | 370 | 382 | 1.00 | 1.00 | ||
| AG | 103 | 91 | 1.17 (0.85–1.60) | .333 | 1.17 (0.85–1.60) | .334 | |
| AA | 4 | 7 | 0.58 (0.17–2.02) | .395 | 0.59 (0.17–2.03) | .403 | |
| AG–AA | 107 | 98 | 1.13 (0.83–1.54) | .449 | 1.13 (0.83–1.54) | .448 | |
| rs1570669 | GG | 224 | 180 | 1.00 | 1.00 | ||
| AG | 170 | 226 | 0.60 (0.46–0.80) |
| 0.60 (0.46–0.80) |
| |
| AA | 83 | 73 | 1.40 (0.63–3.10) | .628 | 0.91 (0.63–1.32) | .633 | |
| AG–AA | 253 | 299 | 0.68 (0.52–0.88) |
| 0.68 (0.53–0.88) |
| |
| rs6068816 | CC | 190 | 216 | 1.00 | 1.00 | ||
| TC | 235 | 209 | 1.27 (0.97–1.67) | .083 | 1.28 (0.98–1.67) | .074 | |
| TT | 52 | 53 | 1.11 (0.72–1.70) | .643 | 1.12 (0.73–1.72) | .618 | |
| TC–TT | 287 | 262 | 1.24 (0.96–1.60) | .105 | 1.25 (0.96–1.61) | .094 | |
| rs2296241 | GG | 156 | 133 | 1.00 | 1.00 | ||
| AG | 229 | 254 | 0.77 (0.57–1.03) | .080 | 0.77 (0.57–1.03) | .078 | |
| AA | 92 | 92 | 0.86 (0.59–1.25) | .423 | 0.85 (0.59–1.23) | .398 | |
| AG–AA | 321 | 346 | 0.79 (0.60–1.05) | .102 | 0.79 (0.60–1.04) | .097 | |
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single‐nucleotide polymorphism.
p a<0.05 indicates statistical significance.
p‐values were calculated from unconditional logistic regression analysis.
p‐values were calculated by unconditional logistic regression analysis with adjustments for age and gender.
The SNPs of CYP24A1 gene association with ischemic stroke risk in age status
| SNP | Genotype | >64 | ≤64 | ||
|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||
| rs2762934 | GG | 1.00 | 1.00 | ||
| AG | 0.79 (0.47–1.32) | .367 | 1.62 (1.04–2.52) |
| |
| AA | 0.16 (0.02–1.51) | .111 | 1.61 (0.23–11.15) | .630 | |
| AG–AA | 0.72 (0.44–1.19) | .200 | 1.62 (1.05–2.51) |
| |
| rs1570669 | GG | 1.00 | 1.00 | ||
| AG | 0.63 (0.40–0.99) |
| 0.61 (0.41–0.91) |
| |
| AA | 0.71 (0.40–1.27) | .249 | 1.23 (0.72–2.10) | .453 | |
| AG–AA | 0.66 (0.43–0.99) |
| 0.74 (0.51–1.07) | .107 | |
| rs6068816 | CC | 1.00 | 1.00 | ||
| TC | 1.64 (1.06–2.53) |
| 1.05 (0.72–1.54) | .798 | |
| TT | 0.96 (0.49–1.89) | .918 | 1.21 (0.65–2.28) | .547 | |
| TC–TT | 1.47 (0.97–2.23) | .068 | 1.18 (0.65–2.16) | .582 | |
| rs2296241 | GG | 1.00 | 1.00 | ||
| AG | 0.82 (0.52–1.29) | .381 | 0.74 (0.48–1.13) | .158 | |
| AA | 0.65 (0.35–1.20) | .17 | 1.10 (0.66–1.84) | .721 | |
| AG–AA | 0.77 (0.50–1.19) | .246 | 0.83 (0.56–1.24) | .365 | |
p values were calculated by unconditional logistic regression adjusted by gender and age; p < .05 indicates statistical significance.
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single‐nucleotide polymorphism.
The SNPs of CYP24A1 gene association with ischemic stroke risk under stratification analysis of gender
| SNP | Genotype | Female | Male | ||
|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||
| rs2762934 | GG | 1.00 | 1.00 | ||
| AG | 1.48 (0.86–2.55) | .159 | 1.04 (0.71–1.54) | .829 | |
| AA | — | .999 | 0.80 (0.21–3.00) | .737 | |
| AG–AA | 1.38 (0.481–2.36) | .240 | 1.03 (0.70–1.50) | .897 | |
| rs1570669 | GG | 1.00 | 1.00 | ||
| AG | 0.46 (0.28–0.74) |
| 0.69 (0.49–0.97) |
| |
| AA | 1.08 (0.57–2.05) | .821 | 0.84 (0.53–1.32) | .447 | |
| AG–AA | 0.58 (0.37–0.91) |
| 0.73 (0.53–1.00) |
| |
| rs6068816 | CC | 1.00 | 1.00 | ||
| TC | 1.28 (0.80–2.03) | .307 | 1.28 (0.92–1.78) | .151 | |
| TT | 0.82 (0.41–1.65) | .576 | 1.34 (0.77–2.33) | .302 | |
| TC–TT | 1.53 (0.74–1.79) | .524 | 1.29 (0.94–1.77) | .122 | |
| rs2296241 | GG | 1.00 | 1.00 | ||
| AG | 1.13 (0.68–1.88) | .645 | 0.63 (0.44–0.90) |
| |
| AA | 0.63 (0.33–1.20) | .156 | 1.02 (0.65–1.62) | .927 | |
| AG–AA | 0.96 (0.59–1.56) | .868 | 0.72 (0.51–1.01) | .059 | |
p values were calculated by unconditional logistic regression adjusted by age and gender; p < .05 indicates statistical significance.
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single‐nucleotide polymorphism.
The SNPs of CYP24A1 gene association with ischemic stroke risk under stratification analysis of other risk factors
| SNP | Genotype | Hypertension | Coronary disease | ||
|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||
| rs2762934 | GG | 1.00 | 1.00 | ||
| AG | 1.30 (0.79–2.16) | .306 | 1.42 (0.85–2.38) | .182 | |
| AA | 0.47 (0.06–3.42) | .455 | — | — | |
| AG–AA | 1.24 (0.76–2.03) | .388 | 1.36 (0.81–2.28) | .239 | |
| rs1570669 | GG | 1.00 | 1.00 | ||
| AG | 0.79 (0.51–1.24) | .310 | 0.95 (0.58–1.55) | .837 | |
| AA | 0.58 (0.34–0.99) |
| 0.96 (0.51–1.81) | .908 | |
| AG–AA | 0.71 (0.48–1.07) | .099 | 0.95 (0.61–1.49) | .836 | |
| rs6068816 | CC | 1.00 | 1.00 | ||
| TC | 1.02 (0.66–1.56) | .939 | 1.26 (0.78–2.03) | .347 | |
| TT | 0.90 (0.46–1.77) | .769 | 1.02 (0.47–2.20) | .965 | |
| TC–TT | 1.00 (0.66–1.50) | .982 | 1.21 (0.76–1.93) | .414 | |
| rs2296241 | GG | 1.00 | 1.00 | ||
| AG | 1.02 (0.65–1.62) | .918 | 0.87 (0.53–1.43) | .586 | |
| AA | 0.88 (0.50–1.55) | .660 | 0.71 (0.37–1.37) | .307 | |
| AG‐/A | 0.98 (0.64–1.50) | .923 | 0.82 (0.52–1.31) | .414 | |
p values were calculated by unconditional logistic regression adjusted by age and gender; p < .05 indicates statistical significance.
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single‐nucleotide polymorphism.