Literature DB >> 31871737

Crystal structure of 4,6-dimethyl-2-[(2,3,4,6-tetra-O-acetyl-β-d-galacto-pyranos-yl)sulfan-yl]pyrimidine.

Mamdouh A Abu-Zaied1, Galal H Elgemeie2, Peter G Jones3.   

Abstract

In the title com-pound, C20H26N2O9S, the S atom is attached equatorially to the sugar ring. The C-S bond lengths are unequal, with S-Cs = 1.8018 (13) Å and S-Cp = 1.7662 (13) Å (s = sugar and p = pyrimid-yl). In the crystal, a system of three weak hydrogen bonds, sharing an oxygen acceptor, links the mol-ecules to form chains propagating parallel to the b-axis direction. © Abu-Zaied et al. 2019.

Entities:  

Keywords:  crystal structure; galactose; pyrimidine; weak hydrogen bond

Year:  2019        PMID: 31871737      PMCID: PMC6895939          DOI: 10.1107/S205698901901449X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Nucleosides are building blocks of biological systems and display a wide range of biological activities (Ding et al., 2003 ▸). Pyrimidine nucleoside analogues provide diverse and novel moieties for pharmacological targets, and they play basic and com­prehensive roles in the field of medicinal chemistry (Xu et al., 2017 ▸). Different strategies for the synthesis of many pyrimidine nucleoside analogues have been developed to access new and potent pharmacological agents (Cao et al., 2011 ▸). Many such derivatives are manufactured as potential chemotherapeutic agents and have a significant impact on current medicinal research (Ohkubo et al., 2012 ▸). Recently, thio­glycosides have proved to be important in the production of medically important carbohydrate com­pounds, because of their ease of preparation and chemical stability (Gourdain et al., 2011 ▸). We have recently described the preparation of various pyrimidine and pyridine thio­glycosides that displayed antagonistic activity (Hammad et al., 2018 ▸; Elgemeie et al., 2010 ▸). We have also reported the use of di­hydro­pyridine thio­glycosides as substrates or inhibitors of protein glycosyl­ation (Scale et al., 1997 ▸; Elgemeie et al., 2015 ▸, 2016 ▸, 2017 ▸) and the use of pyrimidine thio­glycosides as anti­hepatocellular carcinoma agents (Elgemeie & Farag, 2017 ▸). Continuing our efforts to develop simple and cost-effective methodologies for the synthesis of pyrimidine thio­glycosides, we report here the one-step synthesis of a pyrimidine-2-thio­galactoside derivative by the reaction of 4,6-di­methyl­pyrimidine-2(1H)-thione (1) with 2,3,4,6-tetra-O-acetyl-α-d-galactopyranosyl bromide (2). This reaction in NaH/DMF at room temperature gave a product for which two isomeric structures seemed possible, corresponding to two possible modes of glysosylation to give the pyrimidine-N-galactoside (3) or its regioisomer pyrimidine-2-thio­galac­to­side 4 (see Scheme). Spectroscopic data cannot differentiate between these structures. It has been suggested that 1 reacts with 2 via a simple SN2 reaction to give the β-glycoside product 4 (Davis, 2000 ▸).

Structural commentary

The crystal structure determination indicated unambiguously the formation of the pyrimidine-2-thio­galactoside, 4, as the only product in the solid state. The mol­ecular structure of 4 is shown in Fig. 1 ▸ (for selected torsion angles, see Table 1 ▸) and the S atom is attached equatorially to the sugar ring. Similar to the structure of a related glucose derivative (Masoud et al., 2017 ▸), the C—S bond lengths are unequal, with S—Cs = 1.8018 (13) Å and S—Cp = 1.7662 (13) Å (s = sugar and p = pyrimid­yl). The relative orientation of the pyridyl ring and the sugar moiety is defined by the torsion angles N2—C1—S1—C11 [−7.85 (12)°] and C1—S1—C11—C12 [165.01 (9)°]. All the acetyl groups show extended conformations, with absolute C—O—C—C torsion angles in the range 173–179°.
Figure 1

The mol­ecular structure of the title com­pound, 4, in the crystal. Displacement ellipsoids represent 50% probability levels.

Table 1

Selected torsion angles (°)

S1—C11—C12—C13178.21 (9)C22—C21—O4—C14177.90 (11)
S1—C11—O1—C15171.60 (8)C24—C23—O5—C16178.85 (13)
C18—C17—O2—C12176.21 (11)C15—C16—O5—C23174.82 (12)
C20—C19—O3—C13−173.83 (12)  

Supra­molecular features

Some short C—H⋯O and C—H⋯S contacts are listed in Table 2 ▸, but these are at best borderline ‘weak’ hydrogen bonds, particularly in view of their narrow angles. The mol­ecular packing is thus rather featureless. However, a motif of three sugar-ring C—H groups (C13H13, C14—H14 and C15H15) sharing a common acceptor (O8) can be recognized (Fig. 2 ▸). Neighbouring mol­ecules are connected via the 21 operator, leading to chains of mol­ecules propagating parallel to the b-axis direction.
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7C⋯O9i 0.982.573.495 (2)157
C8—H8B⋯O1ii 0.982.523.2499 (18)131
C13—H13⋯O8iii 1.002.653.2998 (16)123
C14—H14⋯O8iii 1.002.533.0626 (16)113
C15—H15⋯O8iii 1.002.503.1759 (16)124
C18—H18B⋯S1iv 0.982.953.7876 (19)144
C22—H22C⋯O6v 0.982.513.1911 (19)127

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Figure 2

Packing diagram of 4 projected parallel to the ab plane in the region z ≃ 1. Dashed lines indicate weak C—H⋯O hydrogen bonds. H atoms not involved in this hydrogen bonding system have been omitted.

Database survey

A search of the Cambridge Structural Database (Vwersion 2.0.0; Groom et al., 2016 ▸) for tetra­acetyl thio­glycosides with an S-bonded heterocycle [linkage S—C(—N)2, restricted to hexoses] gave one hit, a 1,2,4-triazole derivative of tetra­acetyl­glucose (refcode HEKPUL; El Ashry et al., 2018 ▸).

Synthesis and crystallization

To a solution of pyrimidine-2(1H)-thione (1; 1.40 g, 0.01 mol) in dry DMF (20 ml), NaH (15 mmol) was added gradually over a period of 15 min and the solution was stirred at room temperature for another 30 min. A solution of 2,3,4,6-tetra-O-acetyl-α-d-galacto­pyranosyl bromide (2; 4.52 g, 0.011 mol) in DMF (20 ml) was then added dropwise over a period of 30 min and the reaction mixture was stirred at room temperature until the reaction was judged com­plete by thin-layer chromatography (3–6 h). The mixture was evaporated under reduced pressure at 333 K and the residue was washed with distilled water to remove potassium bromide. The crude solid was collected by filtration and purified using column chromatography (the solvent system was petroleum ether/ethyl acetate, 3:1 v/v; R F = 0.35); after evaporation of the solvent, this afforded com­pound 4 as colourless crystals in 85% yield (m.p. 441.2 K). IR (KBr, cm−1): ν 1752 (C=O); 1H NMR (500 MHz, DMSO-d 6): δ 2.11 (s, 12H, 4 × OAc), 2.45 (s, 6H, 2CH3), 4.01–4.12 (m, 2H, 2H-6′), 4.35–4.37 (m, 1H, H-5′), 5.21 (t, 1H, J 4′-3′ = 2.6, J 4′-5′ = 2.4 Hz, H-4′), 5.42–5.46 (m, 2H, H-3′, H-2′), 5.98 (d, 1H, J 1′-2′ = 10.65 Hz, H-1′), 7.01 (s, 1H, pyrimidine H-5); 13C NMR: δ 21.43 (4 × OAc), 22.4 (2CH3), 62.13 (C-6′), 68.41 (C-5′), 71.12 (C-4′), 74.43 (C-3′), 77.56 (C-2′), 82.12 (C-1′), 118.41 (C-5), 168.35 (C-4), 170.45 (C-6), 172.78 (4 × C=O). Analysis calculated (%) for C20H26N2O9S: C 51.06, H 5.57, N 5.95, S 6.82; found: C 51.16, H 5.46, N 5.82, S 6.75.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Methyl groups were refined as idealized rigid groups allowed to rotate but not tip (C—H = 0.98 Å and H—C—H = 109.5°). Other H atoms were included using a riding model starting from calculated positions (aromatic C—H = 0.95 Å, methyl­ene C—H = 0.99 Å and methine C—H = 1.00 Å).
Table 3

Experimental details

Crystal data
Chemical formulaC20H26N2O9S
M r 470.49
Crystal system, space groupMonoclinic, P21
Temperature (K)100
a, b, c (Å)11.4868 (2), 8.6444 (2), 11.5561 (2)
β (°)91.3762 (16)
V3)1147.14 (4)
Z 2
Radiation typeMo Kα
μ (mm−1)0.19
Crystal size (mm)0.40 × 0.40 × 0.08
 
Data collection
DiffractometerOxford Diffraction Xcalibur Eos
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2015)
T min, T max 0.896, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections107162, 7825, 7530
R int 0.034
(sin θ/λ)max−1)0.757
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.028, 0.073, 1.04
No. of reflections7825
No. of parameters295
No. of restraints1
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.34, −0.21
Absolute structureFlack x determined using 3355 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter−0.003 (11)

Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2017 (Sheldrick, 2015 ▸) and XP (Siemens, 1994 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S205698901901449X/hb7861sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901901449X/hb7861Isup2.hkl CCDC references: 1962352, 1962352 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H26N2O9SF(000) = 496
Mr = 470.49Dx = 1.362 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 11.4868 (2) ÅCell parameters from 34705 reflections
b = 8.6444 (2) Åθ = 2.5–31.9°
c = 11.5561 (2) ŵ = 0.19 mm1
β = 91.3762 (16)°T = 100 K
V = 1147.14 (4) Å3Plate, colourless
Z = 20.40 × 0.40 × 0.08 mm
Oxford Diffraction Xcalibur Eos diffractometer7825 independent reflections
Radiation source: fine-focus sealed X-ray tube7530 reflections with I > 2σ(I)
Detector resolution: 16.1419 pixels mm-1Rint = 0.034
ω–scanθmax = 32.6°, θmin = 2.5°
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2015)h = −16→17
Tmin = 0.896, Tmax = 1.000k = −13→12
107162 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.073w = 1/[σ2(Fo2) + (0.0448P)2 + 0.1562P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.003
7825 reflectionsΔρmax = 0.34 e Å3
295 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack x determined using 3355 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.003 (11)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S10.31717 (3)0.37712 (4)0.52391 (3)0.01490 (7)
C10.20586 (11)0.24276 (15)0.55326 (12)0.0142 (2)
N20.19449 (10)0.18868 (14)0.65991 (10)0.0157 (2)
C30.10603 (12)0.08858 (17)0.67531 (12)0.0172 (2)
C40.03201 (12)0.04670 (18)0.58372 (14)0.0206 (3)
H4−0.030920−0.0226270.5947910.025*
C50.05295 (11)0.10958 (19)0.47507 (13)0.0199 (3)
N60.14080 (10)0.20913 (15)0.45864 (10)0.0171 (2)
C70.09350 (14)0.0274 (2)0.79576 (14)0.0245 (3)
H7A0.168605−0.0130570.8241510.037*
H7B0.035507−0.0557840.7952170.037*
H7C0.0682100.1109570.8466390.037*
C8−0.02150 (15)0.0695 (3)0.37087 (15)0.0321 (4)
H8A−0.0067400.1433330.3085900.048*
H8B−0.1037880.0741090.3911030.048*
H8C−0.002582−0.0352840.3448630.048*
C110.36873 (11)0.41461 (15)0.66971 (11)0.0131 (2)
H110.3752900.3146640.7129430.016*
C120.48727 (11)0.49574 (15)0.67193 (11)0.0128 (2)
H120.4834200.5938880.6261930.015*
C130.52391 (10)0.52856 (15)0.79714 (11)0.0126 (2)
H130.5435130.4289680.8371010.015*
C140.42901 (11)0.61209 (15)0.86310 (10)0.0125 (2)
H140.4503590.6159250.9474500.015*
C150.31396 (11)0.52721 (16)0.84512 (11)0.0134 (2)
H150.3203870.4219660.8806260.016*
C160.21073 (12)0.61091 (19)0.89541 (11)0.0182 (2)
H16A0.1995820.7128220.8576620.022*
H16B0.1387320.5493290.8837780.022*
C170.60600 (13)0.42066 (17)0.51651 (12)0.0189 (3)
C180.70211 (15)0.3144 (2)0.48332 (15)0.0268 (3)
H18A0.7012480.3019100.3990200.040*
H18B0.6911630.2134380.5200120.040*
H18C0.7770160.3582410.5091500.040*
C190.70586 (11)0.60977 (19)0.88007 (12)0.0195 (3)
C200.80074 (13)0.7270 (2)0.86755 (15)0.0289 (3)
H20A0.7773570.8244630.9035110.043*
H20B0.8146940.7442610.7852310.043*
H20C0.8722520.6888850.9057290.043*
C210.47753 (11)0.87850 (18)0.87510 (11)0.0161 (2)
C220.46064 (15)1.03358 (18)0.81936 (13)0.0229 (3)
H22A0.4841691.1149200.8741640.034*
H22B0.3783971.0470570.7971180.034*
H22C0.5082941.0402090.7503220.034*
C230.15859 (13)0.71433 (19)1.07533 (13)0.0219 (3)
C240.19319 (16)0.7243 (3)1.20142 (14)0.0306 (4)
H24A0.1354760.7856141.2424270.046*
H24B0.2697210.7737111.2095400.046*
H24C0.1969230.6199291.2344810.046*
O10.28647 (8)0.51166 (12)0.72429 (8)0.01402 (17)
O20.57416 (8)0.39412 (12)0.62726 (8)0.01502 (18)
O30.62667 (8)0.62251 (13)0.79139 (8)0.01642 (18)
O40.41523 (8)0.76733 (12)0.81822 (8)0.01450 (18)
O50.23709 (9)0.63008 (14)1.01710 (9)0.0198 (2)
O60.56194 (12)0.51912 (15)0.45620 (10)0.0278 (2)
O70.69797 (10)0.51640 (16)0.95647 (10)0.0266 (2)
O80.53897 (9)0.85198 (13)0.95903 (9)0.0201 (2)
O90.07262 (10)0.76925 (17)1.03075 (11)0.0295 (3)
U11U22U33U12U13U23
S10.01701 (13)0.01501 (14)0.01247 (12)−0.00376 (11)−0.00397 (9)−0.00027 (11)
C10.0126 (5)0.0123 (6)0.0177 (5)0.0001 (4)−0.0024 (4)−0.0023 (4)
N20.0156 (5)0.0138 (5)0.0176 (5)0.0000 (4)−0.0019 (4)0.0000 (4)
C30.0151 (5)0.0148 (6)0.0218 (6)0.0007 (4)0.0013 (4)0.0003 (5)
C40.0143 (5)0.0210 (7)0.0265 (7)−0.0033 (5)−0.0001 (5)−0.0024 (5)
C50.0136 (5)0.0224 (7)0.0235 (6)−0.0022 (5)−0.0030 (5)−0.0043 (5)
N60.0144 (5)0.0191 (6)0.0177 (5)−0.0013 (4)−0.0037 (4)−0.0033 (4)
C70.0223 (6)0.0257 (8)0.0257 (7)−0.0023 (6)0.0014 (5)0.0072 (6)
C80.0232 (7)0.0468 (11)0.0260 (7)−0.0135 (7)−0.0066 (6)−0.0073 (7)
C110.0139 (5)0.0129 (6)0.0123 (5)−0.0003 (4)−0.0036 (4)−0.0004 (4)
C120.0139 (5)0.0126 (6)0.0120 (5)−0.0005 (4)−0.0026 (4)−0.0009 (4)
C130.0118 (5)0.0136 (6)0.0122 (5)−0.0016 (4)−0.0029 (4)−0.0008 (4)
C140.0142 (5)0.0118 (5)0.0114 (5)0.0002 (4)−0.0031 (4)0.0011 (4)
C150.0139 (5)0.0149 (6)0.0112 (5)0.0009 (4)−0.0027 (4)0.0009 (4)
C160.0159 (5)0.0242 (7)0.0142 (5)0.0030 (5)−0.0017 (4)−0.0005 (5)
C170.0222 (6)0.0199 (7)0.0148 (5)−0.0085 (5)0.0028 (4)−0.0051 (5)
C180.0255 (7)0.0288 (8)0.0266 (7)−0.0049 (6)0.0080 (6)−0.0112 (6)
C190.0132 (5)0.0263 (7)0.0188 (6)0.0007 (5)−0.0036 (4)−0.0079 (5)
C200.0169 (6)0.0392 (10)0.0303 (8)−0.0094 (6)−0.0020 (5)−0.0098 (7)
C210.0202 (5)0.0137 (6)0.0142 (5)−0.0009 (5)−0.0014 (4)−0.0028 (5)
C220.0356 (8)0.0137 (6)0.0189 (6)−0.0028 (6)−0.0062 (5)0.0010 (5)
C230.0187 (6)0.0250 (7)0.0221 (6)−0.0031 (5)0.0056 (5)−0.0031 (5)
C240.0286 (7)0.0445 (11)0.0189 (7)−0.0026 (7)0.0045 (6)−0.0080 (7)
O10.0138 (4)0.0156 (4)0.0125 (4)0.0015 (3)−0.0042 (3)−0.0007 (3)
O20.0156 (4)0.0163 (5)0.0131 (4)−0.0001 (3)0.0001 (3)−0.0018 (3)
O30.0141 (4)0.0201 (5)0.0149 (4)−0.0046 (4)−0.0029 (3)−0.0025 (4)
O40.0195 (4)0.0108 (4)0.0129 (4)−0.0004 (3)−0.0055 (3)0.0005 (3)
O50.0183 (4)0.0270 (6)0.0142 (4)0.0031 (4)−0.0005 (3)−0.0020 (4)
O60.0396 (6)0.0273 (6)0.0167 (5)−0.0032 (5)0.0034 (4)0.0030 (4)
O70.0231 (5)0.0330 (7)0.0233 (5)0.0017 (5)−0.0102 (4)0.0011 (5)
O80.0243 (5)0.0184 (5)0.0173 (4)0.0006 (4)−0.0076 (4)−0.0046 (4)
O90.0207 (5)0.0371 (7)0.0310 (6)0.0060 (5)0.0038 (4)−0.0013 (5)
S1—C11.7662 (13)C23—O91.201 (2)
S1—C111.8018 (13)C23—O51.3511 (18)
C1—N21.3275 (18)C23—C241.504 (2)
C1—N61.3414 (17)C4—H40.9500
N2—C31.3497 (18)C7—H7A0.9800
C3—C41.390 (2)C7—H7B0.9800
C3—C71.499 (2)C7—H7C0.9800
C4—C51.394 (2)C8—H8A0.9800
C5—N61.3432 (18)C8—H8B0.9800
C5—C81.501 (2)C8—H8C0.9800
C11—O11.4223 (15)C11—H111.0000
C11—C121.5314 (17)C12—H121.0000
C12—O21.4349 (16)C13—H131.0000
C12—C131.5239 (17)C14—H141.0000
C13—O31.4356 (15)C15—H151.0000
C13—C141.5267 (18)C16—H16A0.9900
C14—O41.4460 (16)C16—H16B0.9900
C14—C151.5214 (17)C18—H18A0.9800
C15—O11.4305 (15)C18—H18B0.9800
C15—C161.5168 (19)C18—H18C0.9800
C16—O51.4409 (16)C20—H20A0.9800
C17—O61.204 (2)C20—H20B0.9800
C17—O21.3591 (16)C20—H20C0.9800
C17—C181.493 (2)C22—H22A0.9800
C19—O71.201 (2)C22—H22B0.9800
C19—O31.3583 (16)C22—H22C0.9800
C19—C201.498 (2)C24—H24A0.9800
C21—O81.2077 (16)C24—H24B0.9800
C21—O41.3584 (16)C24—H24C0.9800
C21—C221.498 (2)
C1—S1—C1199.32 (6)H7A—C7—H7C109.5
N2—C1—N6127.96 (13)H7B—C7—H7C109.5
N2—C1—S1119.85 (10)C5—C8—H8A109.5
N6—C1—S1112.19 (10)C5—C8—H8B109.5
C1—N2—C3116.07 (12)H8A—C8—H8B109.5
N2—C3—C4121.02 (13)C5—C8—H8C109.5
N2—C3—C7115.98 (13)H8A—C8—H8C109.5
C4—C3—C7123.00 (13)H8B—C8—H8C109.5
C3—C4—C5117.95 (13)O1—C11—H11109.3
N6—C5—C4121.56 (13)C12—C11—H11109.3
N6—C5—C8116.76 (14)S1—C11—H11109.3
C4—C5—C8121.68 (14)O2—C12—H12110.6
C1—N6—C5115.43 (12)C13—C12—H12110.6
O1—C11—C12108.80 (10)C11—C12—H12110.6
O1—C11—S1108.29 (8)O3—C13—H13109.4
C12—C11—S1111.73 (9)C12—C13—H13109.4
O2—C12—C13106.07 (10)C14—C13—H13109.4
O2—C12—C11109.85 (10)O4—C14—H14109.9
C13—C12—C11109.05 (10)C15—C14—H14109.9
O3—C13—C12105.66 (10)C13—C14—H14109.9
O3—C13—C14110.69 (10)O1—C15—H15109.1
C12—C13—C14112.20 (10)C16—C15—H15109.1
O4—C14—C15108.14 (10)C14—C15—H15109.1
O4—C14—C13109.47 (10)O5—C16—H16A110.5
C15—C14—C13109.39 (10)C15—C16—H16A110.5
O1—C15—C16105.22 (10)O5—C16—H16B110.5
O1—C15—C14110.44 (10)C15—C16—H16B110.5
C16—C15—C14113.71 (11)H16A—C16—H16B108.7
O5—C16—C15106.32 (10)C17—C18—H18A109.5
O6—C17—O2123.07 (14)C17—C18—H18B109.5
O6—C17—C18126.10 (14)H18A—C18—H18B109.5
O2—C17—C18110.82 (13)C17—C18—H18C109.5
O7—C19—O3123.23 (13)H18A—C18—H18C109.5
O7—C19—C20126.41 (14)H18B—C18—H18C109.5
O3—C19—C20110.37 (13)C19—C20—H20A109.5
O8—C21—O4123.04 (13)C19—C20—H20B109.5
O8—C21—C22125.63 (13)H20A—C20—H20B109.5
O4—C21—C22111.33 (11)C19—C20—H20C109.5
O9—C23—O5123.46 (14)H20A—C20—H20C109.5
O9—C23—C24126.07 (15)H20B—C20—H20C109.5
O5—C23—C24110.45 (14)C21—C22—H22A109.5
C11—O1—C15110.79 (9)C21—C22—H22B109.5
C17—O2—C12116.15 (11)H22A—C22—H22B109.5
C19—O3—C13117.11 (11)C21—C22—H22C109.5
C21—O4—C14115.54 (10)H22A—C22—H22C109.5
C23—O5—C16114.90 (11)H22B—C22—H22C109.5
C3—C4—H4121.0C23—C24—H24A109.5
C5—C4—H4121.0C23—C24—H24B109.5
C3—C7—H7A109.5H24A—C24—H24B109.5
C3—C7—H7B109.5C23—C24—H24C109.5
H7A—C7—H7B109.5H24A—C24—H24C109.5
C3—C7—H7C109.5H24B—C24—H24C109.5
C11—S1—C1—N2−7.85 (12)C12—C13—C14—C1549.77 (14)
C11—S1—C1—N6171.73 (10)O4—C14—C15—O163.93 (13)
N6—C1—N2—C3−0.6 (2)C13—C14—C15—O1−55.22 (14)
S1—C1—N2—C3178.90 (10)O4—C14—C15—C16−54.09 (13)
C1—N2—C3—C4−0.2 (2)C13—C14—C15—C16−173.24 (11)
C1—N2—C3—C7179.87 (13)O1—C15—C16—O5−179.18 (11)
N2—C3—C4—C50.9 (2)C14—C15—C16—O5−58.19 (14)
C7—C3—C4—C5−179.23 (15)C12—C11—O1—C15−66.76 (12)
C3—C4—C5—N6−0.8 (2)S1—C11—O1—C15171.60 (8)
C3—C4—C5—C8179.22 (15)C16—C15—O1—C11−171.37 (11)
N2—C1—N6—C50.7 (2)C14—C15—O1—C1165.52 (13)
S1—C1—N6—C5−178.84 (10)O6—C17—O2—C12−2.78 (19)
C4—C5—N6—C10.1 (2)C18—C17—O2—C12176.21 (11)
C8—C5—N6—C1−179.96 (14)C13—C12—O2—C17−140.59 (11)
C1—S1—C11—O1−75.17 (9)C11—C12—O2—C17101.70 (12)
C1—S1—C11—C12165.01 (9)O7—C19—O3—C136.0 (2)
O1—C11—C12—O2174.55 (9)C20—C19—O3—C13−173.83 (12)
S1—C11—C12—O2−65.93 (12)C12—C13—O3—C19−150.10 (11)
O1—C11—C12—C1358.70 (13)C14—C13—O3—C1988.21 (13)
S1—C11—C12—C13178.21 (9)O8—C21—O4—C14−1.39 (18)
O2—C12—C13—O369.45 (12)C22—C21—O4—C14177.90 (11)
C11—C12—C13—O3−172.30 (10)C15—C14—O4—C21146.97 (11)
O2—C12—C13—C14−169.84 (10)C13—C14—O4—C21−93.93 (12)
C11—C12—C13—C14−51.59 (14)O9—C23—O5—C160.4 (2)
O3—C13—C14—O449.20 (13)C24—C23—O5—C16178.85 (13)
C12—C13—C14—O4−68.56 (13)C15—C16—O5—C23174.82 (12)
O3—C13—C14—C15167.53 (10)
D—H···AD—HH···AD···AD—H···A
C7—H7C···O9i0.982.573.495 (2)157
C8—H8B···O1ii0.982.523.2499 (18)131
C13—H13···O8iii1.002.653.2998 (16)123
C14—H14···O8iii1.002.533.0626 (16)113
C15—H15···O8iii1.002.503.1759 (16)124
C18—H18B···S1iv0.982.953.7876 (19)144
C22—H22C···O6v0.982.513.1911 (19)127
  12 in total

1.  Formation of new base pairs between inosine and 5-methyl-2-thiocytidine derivatives.

Authors:  Akihiro Ohkubo; Yudai Nishino; Yu Ito; Hirosuke Tsunoda; Kohji Seio; Mitsuo Sekine
Journal:  Org Biomol Chem       Date:  2012-01-27       Impact factor: 3.876

2.  A prebiotically plausible synthesis of pyrimidine β-ribonucleosides and their phosphate derivatives involving photoanomerization.

Authors:  Jianfeng Xu; Maria Tsanakopoulou; Christopher J Magnani; Rafał Szabla; Judit E Šponer; Jiří Šponer; Robert W Góra; John D Sutherland
Journal:  Nat Chem       Date:  2016-11-21       Impact factor: 24.427

3.  Antimetabolites: A First Synthesis of a New Class of Cytosine Thioglycoside Analogs.

Authors:  Galal Elgemeie; Mamdouh Abu-Zaied; Rasha Azzam
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2016-03-17       Impact factor: 1.381

4.  Novel Nucleoside Analogues: First Synthesis of Pyridine-4-Thioglycosides and Their Cytotoxic Evaluation.

Authors:  Galal Elgemeie; Mamdouh Abou-Zeid; Shahinaz Alsaid; Ali Hebishy; Hanaa Essa
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2015-10-13       Impact factor: 1.381

5.  Design, synthesis, and in vitro anti-hepatocellular carcinoma of novel thymine thioglycoside analogs as new antimetabolic agents.

Authors:  Galal H Elgemeie; Ayman B Farag
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2017-03-31       Impact factor: 1.381

6.  A new class of antimetabolites: pyridine thioglycosides as potential anticancer agents.

Authors:  Galal H Elgemeie; Elsayed M Mahdy; Mona A Elgawish; Mohammad M Ahmed; Wafaa G Shousha; Mohammad E Eldin
Journal:  Z Naturforsch C J Biosci       Date:  2010 Sep-Oct

7.  Synthesis and photochemical behavior of the tetrazolo tautomer of 2-azido-4-pyrimidinone-2'-deoxyriboside.

Authors:  Stéphanie Gourdain; Christian Petermann; Agathe Martinez; Dominique Harakat; Pascale Clivio
Journal:  J Org Chem       Date:  2011-02-09       Impact factor: 4.354

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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  1 in total

1.  Anti-Covid-19 Drug Analogues: Synthesis of Novel Pyrimidine Thioglycosides as Antiviral Agents Against SARS-COV-2 and Avian Influenza H5N1 Viruses.

Authors:  Mamdouh A Abu-Zaied; Galal H Elgemeie; Nashwa M Mahmoud
Journal:  ACS Omega       Date:  2021-06-24
  1 in total

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