Literature DB >> 31866389

Amino and PEG-amino graphene oxide grids enrich and protect samples for high-resolution single particle cryo-electron microscopy.

Feng Wang1, Zanlin Yu1, Miguel Betegon1, Melody G Campbell1, Tural Aksel2, Jianhua Zhao1, Sam Li1, Shawn M Douglas2, Yifan Cheng1, David A Agard3.   

Abstract

Cryo-EM samples prepared using traditional methods often suffer from too few particles, poor particle distribution, strongly biased orientation, or damage from the air-water interface. Here we report that functionalization of graphene oxide (GO) coated grids with amino groups concentrates samples on the grid with improved distribution and orientation. By introducing a PEG spacer, particles are kept away from both the GO surface and the air-water interface, protecting them from potential denaturation.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Air-water interface; Amino functionalization; Cryo-EM; Graphene oxide; Sample preparation

Mesh:

Substances:

Year:  2019        PMID: 31866389      PMCID: PMC7272056          DOI: 10.1016/j.jsb.2019.107437

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  14 in total

1.  Nanofluid of graphene-based amphiphilic Janus nanosheets for tertiary or enhanced oil recovery: High performance at low concentration.

Authors:  Dan Luo; Feng Wang; Jingyi Zhu; Feng Cao; Yuan Liu; Xiaogang Li; Richard C Willson; Zhaozhong Yang; Ching-Wu Chu; Zhifeng Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

2.  Routine single particle CryoEM sample and grid characterization by tomography.

Authors:  Venkata P Dandey; Hui Wei; Alex J Noble; Julia Brasch; Jillian Chase; Priyamvada Acharya; Yong Zi Tan; Zhening Zhang; Laura Y Kim; Giovanna Scapin; Micah Rapp; Edward T Eng; William J Rice; Anchi Cheng; Carl J Negro; Lawrence Shapiro; Peter D Kwong; David Jeruzalmi; Amedee des Georges; Clinton S Potter; Bridget Carragher
Journal:  Elife       Date:  2018-05-29       Impact factor: 8.140

3.  Electron microscopy of frozen hydrated sections of vitreous ice and vitrified biological samples.

Authors:  A W McDowall; J J Chang; R Freeman; J Lepault; C A Walter; J Dubochet
Journal:  J Microsc       Date:  1983-07       Impact factor: 1.758

Review 4.  Single-Particle Cryo-EM at Crystallographic Resolution.

Authors:  Yifan Cheng
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

5.  Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

Authors:  Yong Zi Tan; Philip R Baldwin; Joseph H Davis; James R Williamson; Clinton S Potter; Bridget Carragher; Dmitry Lyumkis
Journal:  Nat Methods       Date:  2017-07-03       Impact factor: 28.547

6.  The architecture of the spliceosomal U4/U6.U5 tri-snRNP.

Authors:  Thi Hoang Duong Nguyen; Wojciech P Galej; Xiao-chen Bai; Christos G Savva; Andrew J Newman; Sjors H W Scheres; Kiyoshi Nagai
Journal:  Nature       Date:  2015-06-24       Impact factor: 49.962

7.  Protein denaturation at the air-water interface and how to prevent it.

Authors:  Edoardo D'Imprima; Davide Floris; Mirko Joppe; Ricardo Sánchez; Martin Grininger; Werner Kühlbrandt
Journal:  Elife       Date:  2019-04-01       Impact factor: 8.140

8.  Multifunctional graphene supports for electron cryomicroscopy.

Authors:  Katerina Naydenova; Mathew J Peet; Christopher J Russo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-24       Impact factor: 11.205

9.  A simple and robust procedure for preparing graphene-oxide cryo-EM grids.

Authors:  Eugene Palovcak; Feng Wang; Shawn Q Zheng; Zanlin Yu; Sam Li; Miguel Betegon; David Bulkley; David A Agard; Yifan Cheng
Journal:  J Struct Biol       Date:  2018-07-11       Impact factor: 2.867

10.  Eliminating effects of particle adsorption to the air/water interface in single-particle cryo-electron microscopy: Bacterial RNA polymerase and CHAPSO.

Authors:  James Chen; Alex J Noble; Jin Young Kang; Seth A Darst
Journal:  J Struct Biol X       Date:  2019-02-14
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  9 in total

1.  What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models.

Authors:  Michael A Cianfrocco; Elizabeth H Kellogg
Journal:  J Chem Inf Model       Date:  2020-03-09       Impact factor: 4.956

2.  A cryo-electron microscopy support film formed by 2D crystals of hydrophobin HFBI.

Authors:  Hongcheng Fan; Bo Wang; Yan Zhang; Yun Zhu; Bo Song; Haijin Xu; Yujia Zhai; Mingqiang Qiao; Fei Sun
Journal:  Nat Commun       Date:  2021-12-14       Impact factor: 14.919

3.  Structural insights into the human PA28-20S proteasome enabled by efficient tagging and purification of endogenous proteins.

Authors:  Jianhua Zhao; Suraj Makhija; Chenyu Zhou; Hanxiao Zhang; YongQiang Wang; Monita Muralidharan; Bo Huang; Yifan Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-19       Impact factor: 12.779

Review 4.  Developing Graphene Grids for Cryoelectron Microscopy.

Authors:  Hongcheng Fan; Fei Sun
Journal:  Front Mol Biosci       Date:  2022-07-13

Review 5.  Recent Technical Advances in Sample Preparation for Single-Particle Cryo-EM.

Authors:  Yixin Xu; Shangyu Dang
Journal:  Front Mol Biosci       Date:  2022-06-24

6.  General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM.

Authors:  Feng Wang; Yanxin Liu; Zanlin Yu; Sam Li; Shengjie Feng; Yifan Cheng; David A Agard
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

7.  Structure of the radial spoke head and insights into its role in mechanoregulation of ciliary beating.

Authors:  Iris Grossman-Haham; Nicolas Coudray; Zanlin Yu; Feng Wang; Nan Zhang; Gira Bhabha; Ronald D Vale
Journal:  Nat Struct Mol Biol       Date:  2020-12-14       Impact factor: 18.361

8.  Interaction of human erythrocyte catalase with air-water interface in cryoEM.

Authors:  Shaoxia Chen; Jade Li; Kutti R Vinothkumar; Richard Henderson
Journal:  Microscopy (Oxf)       Date:  2022-02-18       Impact factor: 1.571

9.  Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms.

Authors:  Christian B Billesbølle; Caleigh M Azumaya; Rachael C Kretsch; Alexander S Powers; Shane Gonen; Simon Schneider; Tara Arvedson; Ron O Dror; Yifan Cheng; Aashish Manglik
Journal:  Nature       Date:  2020-08-19       Impact factor: 69.504

  9 in total

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