Literature DB >> 31866298

DNA Modification Readers and Writers and Their Interplay.

Cathia Rausch1, Florian D Hastert1, M Cristina Cardoso2.   

Abstract

Genomic DNA is modified in a postreplicative manner and several modifications, the enzymes responsible for their deposition as well as proteins that read these modifications, have been described. Here, we focus on the impact of DNA modifications on the DNA helix and review the writers and readers of cytosine modifications and how they interplay to shape genome composition, stability, and function.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  5-carboxylcytosine; 5-formylcytosine; 5-hydroxymethylcytosine; 5-methylcytosine; 5caC; 5fC; 5hmC; 5mC; C; CGI; CXXC; CpG; CpG island; Cysteine/X/X/cysteine zinc finger motif; Cytosine; Cytosine-phosphate-guanine dinucleotide; DNA helix stability; DNA methylation readers; DNA methyltransferase; DNA modification writers; DNA modifications; DNMT; ES cells; Embryonic stem cells; ID; Intervening domain; MBD; Melting temperature; Methyl-CpG-binding domain; T(m); TET; TRD; Ten-eleven translocation; Transcriptional repression domain; chromatin

Year:  2019        PMID: 31866298     DOI: 10.1016/j.jmb.2019.12.018

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

Review 1.  [Next generation sequencing in histopathology : Applications and methodological challenges].

Authors:  Ulrich Lehmann; Andreas Jung
Journal:  Pathologe       Date:  2021-06-25       Impact factor: 1.011

2.  The N-terminal domain of TET1 promotes the formation of dense chromatin regions refractory to transcription.

Authors:  Audrey Lejart; Siham Zentout; Catherine Chapuis; Ostiane D'Augustin; Rebecca Smith; Gilles Salbert; Sébastien Huet
Journal:  Chromosoma       Date:  2022-03-02       Impact factor: 4.316

3.  Optochemical Control of TET Dioxygenases Enables Kinetic Insights into the Domain-Dependent Interplay of TET1 and MBD1 while Oxidizing and Reading 5-Methylcytosine.

Authors:  Tzu-Chen Lin; Shubhendu Palei; Daniel Summerer
Journal:  ACS Chem Biol       Date:  2022-06-16       Impact factor: 4.634

4.  The chromatin remodelling protein LSH/HELLS regulates the amount and distribution of DNA hydroxymethylation in the genome.

Authors:  Maud De Dieuleveult; Martin Bizet; Laurence Colin; Emilie Calonne; Martin Bachman; Chao Li; Irina Stancheva; Benoit Miotto; François Fuks; Rachel Deplus
Journal:  Epigenetics       Date:  2021-05-07       Impact factor: 4.528

5.  Melatonin-induced suppression of DNA methylation promotes odontogenic differentiation in human dental pulp cells.

Authors:  Jingzhou Li; Qianyi Deng; Wenguo Fan; Qi Zeng; Hongwen He; Fang Huang
Journal:  Bioengineered       Date:  2020-12       Impact factor: 3.269

6.  Sex Chromosomes and Sex Phenotype Contribute to Biased DNA Methylation in Mouse Liver.

Authors:  Qinwei Kim-Wee Zhuang; Jose Hector Galvez; Qian Xiao; Najla AlOgayil; Jeffrey Hyacinthe; Teruko Taketo; Guillaume Bourque; Anna K Naumova
Journal:  Cells       Date:  2020-06-09       Impact factor: 6.600

7.  Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry.

Authors:  Alexandra Stützer; Luisa M Welp; Monika Raabe; Timo Sachsenberg; Christin Kappert; Alexander Wulf; Andy M Lau; Stefan-Sebastian David; Aleksandar Chernev; Katharina Kramer; Argyris Politis; Oliver Kohlbacher; Wolfgang Fischle; Henning Urlaub
Journal:  Nat Commun       Date:  2020-10-16       Impact factor: 14.919

8.  Structural basis of DNA methylation-dependent site selectivity of the Epstein-Barr virus lytic switch protein ZEBRA/Zta/BZLF1.

Authors:  Florent Bernaudat; Montse Gustems; Johannes Günther; Mizar F Oliva; Alexander Buschle; Christine Göbel; Priscilla Pagniez; Julien Lupo; Luca Signor; Christoph W Müller; Patrice Morand; Michael Sattler; Wolfgang Hammerschmidt; Carlo Petosa
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

Review 9.  Malaria in the 'Omics Era'.

Authors:  Mirko Pegoraro; Gareth D Weedall
Journal:  Genes (Basel)       Date:  2021-05-30       Impact factor: 4.096

Review 10.  MeCP2 and Chromatin Compartmentalization.

Authors:  Annika Schmidt; Hui Zhang; M Cristina Cardoso
Journal:  Cells       Date:  2020-04-03       Impact factor: 6.600

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