| Literature DB >> 31849480 |
Yani Chen1, Juan Du1, Yu Wang1, Haiyan Shi1, Qiuyu Jiang1, Yangfeng Wang1, Huahua Zhang1, Yameng Wei1, Wanjuan Xue1, Zhiying Pu2, Yi Gao1, Dan Li1, Yun Feng1, Jing Yan1, Jing Zhang1.
Abstract
PURPOSE: miR-497-5p can inhibit cervical cancer cell proliferation. However, the underlying mechanism remains to be elucidated.Entities:
Keywords: CBX4; MicroRNA-497-5p; carcinoma; cervical cancer; proliferation
Year: 2019 PMID: 31849480 PMCID: PMC6910861 DOI: 10.2147/OTT.S210059
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Primer Sequences Used In qPCR
| Gene Name | Primer Name | Primer Sequence (from 5ʹ to 3ʹ) |
|---|---|---|
| miR-497-5p | Forward | ATCCAGTGCGTGTCGTG |
| Reverse | TGCTCAGCAGCACACTGT | |
| U6 | Forward | GCTTCGGCAGCACATATACTAAAAT |
| Reverse | CGCTTCACGAATTTGCGTGTCAT | |
| CBX4 | Forward | CTGGTGAAATGGAGAGGC |
| Reverse | GAACGACGGGCAAAGGTAGG | |
| GAPDH | Forward | TGAAGGTCGGAGTCAACGGATT |
| Reverse | CCTGGAAGATGGTGATGGGATT |
Figure 1Prediction for miR-497-5p regulating genes. (A) an intersection diagram of the number of miR-497-5p interacting genes predicted by microRNA, Target Scan and miRDB software. (B) Protein–protein interaction (PPI) analysis for the 593 miR-497-5p interacting genes commonly predicted by microRNA, Target Scan and miRDB. (C) PPI analysis for the 30 genes that functionally clustered into a group with high cluster score. (D and E) relative expression change analysis of miR-497-5p (D) and CBX4 (E) in cervical squamous cell carcinoma and endocervical adenocarcinoma. Data of TCGA were used. (F) Correlation analysis of miR-497-5p and CBX4 expression in cervical squamous cell carcinoma and endocervical adenocarcinoma. Data of TCGA were used ().
Cluster Analysis For PPI Network Analyzed Diagram
| Cluster | Score (Density*#Nodes) | Nodes | Edges | Node IDs |
|---|---|---|---|---|
| 1 | 5.379 | 30 | 78 | CHEK1, PHF19, PRKAR2A, CCNE1, FBXW7, OMG, SMAD5, CBX4, IHH, BTRC, GNAI3, CBX2, CDK17, GNA12, WIF1, ISLR, SUZ12, LRRN3, EZH1, GPR124, WEE1, NOTCH2, AEBP2, RBPJ, LRP6, WNT3A, RPS6KA6, CDC27, AXIN2, MAP3K3 |
| 2 | 5 | 5 | 10 | TBPL1, ASH1L, SUPT16H, MED26, TBP |
| 3 | 4 | 4 | 6 | CNTNAP1, SCN2A, NFASC, SCN8A |
| 4 | 3.6 | 6 | 9 | WNT7A, CCND1, FGF2, DLL4, SEMA3A, VEGFA |
| 5 | 3 | 3 | 3 | SMAD7, SMURF1, FKBP1A |
| 6 | 3 | 3 | 3 | RELN, PAFAH1B1, PAFAH1B2 |
| 7 | 3 | 3 | 3 | GALNT7, GALNT1, GALNT13 |
| 8 | 3 | 3 | 3 | SOX6, UBE2J1, SUMO3 |
| 9 | 2.8 | 6 | 7 | SHOC2, RAP2C, PPM1D, PPM1L, CASK, MAP2K1 |
| 10 | 2.364 | 12 | 13 | ATG9A, MYB, VPS4A, PDIK1L, TUBA1A, RPS6KA3, UNC13A, YWHAH, VTI1B, PIM1, PRKG1, WIPI2 |
Notes: Cluster analysis was produced by MCODE of cytoscape software. Parameters are, Scoring (Include Loops: false; Degree Cutoff: 2); Cluster Finding (Node Score Cutoff: 0.2; Haircut: true; Fluff: false; K-Core: 2; Max. Depth from Seed: 100).
Relationship Between Genes’ And miR-497 Expression
| Gene | R Value | Gene | R Value |
|---|---|---|---|
| CHEK1 | −0.01945 | ISLR | 0.324021 |
| PHF19 | 0.050232 | SUZ12 | 0.078904 |
| CCNE1 | −0.1274 | LRRN3 | −0.00977 |
| FBXW7 | −0.00828 | EZH1 | 0.253977 |
| OMG | −0.00805 | GPR124 | 0.221022 |
| SMAD5 | 0.124455 | WEE1 | 0.12194 |
| CBX4 | −0.14025 | NOTCH2 | 0.023932 |
| IHH | 0.203239 | AEBP2 | −0.00545 |
| BTRC | −0.07658 | RBPJ | 0.162236 |
| GNAI3 | −0.02774 | WNT3A | 0.070756 |
| CBX2 | −0.01101 | RPS6KA6 | 0.130981 |
| CDK17 | −0.02892 | CDC27 | −0.12934 |
| GNA12 | −0.17605 | AXIN2 | 0.203712 |
| WIF1 | 0.144997 | MAP3K3 | 0.065202 |
Figure 2miR-497-5p regulates CBX4 expression by targeting CBX4 mRNA 3ʹUTR region. (A) qRT-PCR examination for CBX4 mRNA expression and (B and C) for CBX protein expression in miR-497-5p mimics (miR-497-over) and negative control miRNAs (NC) transected Siha and HeLa cells. miR-497-5p mimics (miR-497-over) or negative control RNAs (NC) were transfected for 48 hrs. (D) Predicted binding site of miR-497-5p (green) in CBX4 mRNA 3ʹUTR. (E) Dual-Luciferase reporter assay results for wild type and miR-497-5p binding cite mutant CBX4 3ʹUTR. Cells transfected with miR-497-5p mimics and GLO plasmid were used as control treatments. For all data, * means P< 0.05, ** means P<0.01, *** means P<0.001.
Figure 3CBX4 regulates cervical cancer cells proliferation by regulating of Cyclin A2 and CDK2 expression. (A–C) qRT-PCR (A) and Western blot (B and C) examination for CBX4 RNA interference efficiency. SiCBX4-1 and SiCBX4-2 are interference RNAs used for CBX4 down-regulation. NC is the RNAs used as negative control. (D) MTT examination for the proliferation of Siha (Left) and HeLa (Right) cells pre-transfected with NC, SiCBX4-1 and SiCBX4-2. (E) Cell cycle of Siha and HeLa cells pre-treated with NC or CBX4 siRNA (SiCBX4-1 and SiCBX4-1) were tested using flow cytometry assay (left). The statistic results of three independent experiments is on the right. (F) Influence of CBX4 down-regulation on cell cycle-related protein Cyclin A2 and CDK2 expression. Siha and HeLa cells pre-transfected with NC, SiCBX4-1 or SiCBX4-2 for 48 hrs were used to examine the expression of Cyclin A2 and CDK2 by Western blot (bottom, relative change of gray value). β-Actin was used as the internal control. For all data, * means P< 0.05, ** means P<0.01, *** means P<0.001.
Figure 4CBX4 is responsible for miR-497-5p regulated cervical cancer proliferation. (A and B) qRT-PCR (A) and Western blot (B) examination for CBX4 expression in Siha and HeLa cells treated with miR-497-5p inhibitors (miR-497-in) and/or CBX4 interference RNAs (SiCBX4-1, SiCBX4-2). (C) MTT examination for Siha and HeLa cells’ proliferation. (D) Flow cytometry examination for Siha and Hela cells, cell cycle changes (left). Cells pre-transfected with different RNAs for 48 hrs were used for above examination. Right is a statistical result of three independent experiments. (E) Western blot examination for CDK2 and Cyclin A2 expression. Siha and HeLa cells treated like A were protein extracted and used for Western blot test. Bottom is the relative blot change of the gray value. For all data, * means P< 0.05, ** means P<0.01, *** means P<0.001.