Literature DB >> 31835059

Unveiling invisible protein states with NMR spectroscopy.

T Reid Alderson1, Lewis E Kay2.   

Abstract

Proteins interconvert between multiple conformations, including sparsely populated and transiently formed states that are difficult to characterize in structural detail using standard biophysical methods. In some cases, changes to the dynamical equilibria between conformations can lead to pathological protein aggregation and to the disruption of cellular homeostasis. The detection and characterization of lowly populated conformers is therefore crucial for understanding the basis of protein misfolding. NMR spectroscopy is exquisitely sensitive to the conformational dynamics of biomolecules and can be used to study sparsely populated states at the atomic level. Here, we review recent progress toward understanding the roles of sparsely populated, otherwise 'invisible' states present in protein folding and misfolding, where NMR has provided unique insight into folding intermediates, transiently misfolded states, and soluble oligomers that precede amyloid fibril formation.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31835059     DOI: 10.1016/j.sbi.2019.10.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  25 in total

Review 1.  NMR methods for exploring 'dark' states in ligand binding and protein-protein interactions.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2021-11-02       Impact factor: 9.795

2.  The precious fluorine on the ring: fluorine NMR for biological systems.

Authors:  Andras Boeszoermenyi; Barbara Ogórek; Akshay Jain; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2020-07-10       Impact factor: 2.835

3.  Conditional Disorder in Small Heat-shock Proteins.

Authors:  T Reid Alderson; Jinfa Ying; Ad Bax; Justin L P Benesch; Andrew J Baldwin
Journal:  J Mol Biol       Date:  2020-02-17       Impact factor: 5.469

4.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

5.  Distinct conformational dynamics and allosteric networks in alpha tryptophan synthase during active catalysis.

Authors:  Kathleen F O'Rourke; Rebecca N D'Amico; Debashish Sahu; David D Boehr
Journal:  Protein Sci       Date:  2020-12-19       Impact factor: 6.725

6.  Visualizing and trapping transient oligomers in amyloid assembly pathways.

Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
Journal:  Biophys Chem       Date:  2020-11-10       Impact factor: 2.352

7.  High-pressure NMR measurements provide insights into the different structural states that proteins can adopt.

Authors:  Remco Sprangers
Journal:  Biophys J       Date:  2021-01-22       Impact factor: 4.033

8.  Conformational states dynamically populated by a kinase determine its function.

Authors:  Tao Xie; Tamjeed Saleh; Paolo Rossi; Charalampos G Kalodimos
Journal:  Science       Date:  2020-10-01       Impact factor: 47.728

9.  Modulating Enzyme Function via Dynamic Allostery within Biliverdin Reductase B.

Authors:  Jasmina S Redzic; Michael R Duff; Ashley Blue; Todd M Pitts; Pratul Agarwal; Elan Zohar Eisenmesser
Journal:  Front Mol Biosci       Date:  2021-05-20

10.  Reproducibility in the unfolding process of protein induced by an external electric field.

Authors:  Anna Sinelnikova; Thomas Mandl; Christofer Östlin; Oscar Grånäs; Maxim N Brodmerkel; Erik G Marklund; Carl Caleman
Journal:  Chem Sci       Date:  2020-12-26       Impact factor: 9.825

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