| Literature DB >> 31819545 |
Sandip Patil1,2, Hongyu Chen2, Xiaoli Zhang2, Ma Lian2, Pei-Gen Ren1, Feiqiu Wen2.
Abstract
INTRODUCTION: The emergence of multi-drug-resistant Gram-negative bacteria (GNB) is a concern in China and globally. This study investigated antimicrobial resistance traits and resistance determinant detection in GNB isolates from paediatric patients in China.Entities:
Keywords: ESBLs; Gram-negative bacteria; antimicrobial susceptibility; carbapenemase; molecular characterization
Year: 2019 PMID: 31819545 PMCID: PMC6878922 DOI: 10.2147/IDR.S223736
Source DB: PubMed Journal: Infect Drug Resist ISSN: 1178-6973 Impact factor: 4.003
List of Primers Used in This Study
| Resistance Genes | Primers Pair Sequences | Amplicon Size (bp) | Annealing Temperature (°C) | References |
|---|---|---|---|---|
| ATGATGCAGCATACTTCTGTG | 1626 | 56 | ||
| TCAGCGGATGAATGCGGTG | ||||
| bla | TGCGGGGTTTTTAATGCTG | 785 | 53 | |
| TGGCTCATCACGATCATGC | ||||
| bla | ATGTCACTGTATCGCCGTC | 883 | 54 | |
| TTACTGCCCGTTAACGCC | ||||
| bla | AGGAAGAGTATGATTCAACA | 531 | 57 | |
| CTCGTCGTTTGGTATGGC | ||||
| bla | GGTTATGCGTTATATTCGCC | 866 | 57 | |
| TTAGCTTTGCCAGTGCTC | ||||
| bla | TTGGTGGCATCGATTATCGG | 745 | 55 | |
| GAGCACTTCTTTTGTGATGGC | ||||
| bla | AACGGCTTCATTTTTGTTTAG | 831 | 55 | |
| GCTTCCGCAATAGTTTTATCA | ||||
| bla | CTGACAGCCTCTTTCTCCA | 504 | 56 | |
| GCCAAACAGACCAATGCT | ||||
| bla | GTTAAAAGTTATTAGTAGTTTATTG | 799 | 60 | |
| CTACTCGGCGACTGAGC | ||||
| bla | ATGAGCAAGTTATCTGTATTC | 741 | 60 | |
| TTAGTTGCTTGGTTTTGATGG | ||||
| bla | ATGCGCTTCATTCACGCAC | 864 | 57 | |
| CTATTTGTCCGTGCTCAGG | ||||
| bla | AAAGCAGATCTTGTGACCTATTC | 588 | 56 | |
| TCAGCGCGACTGTGATGTATAAAC | ||||
| bla | AGTCAGCGGCTTAGATA | 978 | 56 | |
| CGTATGAAAAGGACAATC | ||||
| bla | GCGGTAATTTAACCAGA | 961 | 57 | |
| GCCTATGAGCCAGTGTT | ||||
| bla | TTTGCGATGTGCAGTACCAGTAA | 544 | 57 | |
| CGATATCGTTGGTGGTGCCATA |
Figure 1Distribution of isolated Gram-negative pathogens from Shenzhen Children’s Hospital, China.
Figure 2(A) Number of isolates in which resistance is detected for each antibiotic. (B) Detection percentages of resistance to each antibiotic.
Resistance Patterns of Gram-Negative Bacteria for Selected Antibiotics and Antibiotics Classes
| Antibiotic Classes | Name of Antibiotics | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cephalosporin | Ceftazidime | 15 | 1 | 4 | 4 | 1 | 0 | 1 | 0 | 0 | 1 | 0 |
| Ceftriaxone | 37 | 15 | 12 | 10 | 2 | 4 | 1 | 1 | 2 | 0 | 0 | |
| Cefuroxime | 33 | 16 | 14 | 8 | 1 | 5 | 1 | 0 | 2 | 1 | 0 | |
| Cefuroxime Axetile | 38 | 13 | 13 | 9 | 2 | 3 | 1 | 2 | 2 | 1 | 0 | |
| Ertapenem | 5 | 3 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Cefepime | 14 | 4 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| Cefoxitin | 17 | 10 | 3 | 4 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| Cefazolin | 24 | 15 | 5 | 8 | 1 | 4 | 0 | 2 | 1 | 0 | 0 | |
| Penicillin | Amoxicillin | 18 | 7 | 3 | 4 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Ampicillin sulbactam | 30 | 11 | 6 | 13 | 5 | 3 | 0 | 1 | 0 | 1 | 1 | |
| Piperacillin-Tazobactam | 8 | 3 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Aminoglycoside | Amikacin | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| Tobramycin | 8 | 6 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Imipenem | 3 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Quinolones | Ciprofloxacin | 25 | 10 | 8 | 7 | 2 | 1 | 0 | 0 | 1 | 1 | 0 |
| Levofloxacin | 16 | 4 | 1 | 5 | 2 | 1 | 0 | 1 | 1 | 0 | 0 | |
| Monobactam | Aztreonam | 16 | 10 | 10 | 8 | 2 | 1 | 0 | 1 | 1 | 0 | 0 |
| Nitrofuran Derivative | Nitrofurantoin | 13 | 5 | 3 | 3 | 2 | 2 | 0 | 0 | 0 | 1 | 1 |
| Sulphonamides | Trimethoprim/Sulfamethoxazole | 39 | 12 | 9 | 12 | 7 | 1 | 0 | 1 | 0 | 1 | 1 |
| Polymyxin | Colistin | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Tetracycline | Tigecycline | 4 | 6 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
Distribution of MDS, SDR, MDR, and XDR Pattern of Gram-Negative Bacteria
| Isolated Strains | Total | MDS | SDR | MDR | XDR |
|---|---|---|---|---|---|
| 1 | 0 | 1 | 0 | 0 | |
| 1 | 0 | 0 | 1 | 0 | |
| 2 | 0 | 0 | 2 | 0 | |
| 2 | 0 | 0 | 2 | 0 | |
| 2 | 0 | 0 | 2 | 0 | |
| 8 | 2 | 1 | 4 | 1 | |
| 10 | 2 | 0 | 6 | 2 | |
| 22 | 1 | 2 | 17 | 2 | |
| 24 | 0 | 1 | 23 | 0 | |
| 30 | 3 | 0 | 24 | 3 | |
| 68 | 6 | 8 | 41 | 13 | |
| Total | 170 | 14 | 13 | 122 | 21 |
Notes: MDS, susceptible to all antibiotic classes; SDR, resistant to single antibiotic class; MDR, resistant to at least one agent in three or more antimicrobial categories; XDR, resistant to at least one agent in all but two or fewer antimicrobial categories (ie, bacterial isolates remain susceptible to only one or two categories). Source: Based on definitions by Magiorakos et al, 2012.23
Prevalence of Drug Resistance Determinant (Genes) in Isolated Gram-Negative Bacteria
| Drug Resistance Determinant | Total n=170 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | |
| blaCTX-M | 37 | 19 | 18 | 14 | 6 | 3 | 2 | 0 | 1 | 1 | 0 | 101 |
| blaNDM-1 | 15 | 6 | 5 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 30 |
| bla | 21 | 12 | 12 | 8 | 01 | 1 | 1 | 0 | 1 | 0 | 1 | 58 |
| bla | 30 | 16 | 9 | 7 | 3 | 3 | 0 | 0 | 1 | 1 | 0 | 70 |
| bla | 16 | 16 | 12 | 7 | 3 | 3 | 0 | 0 | 1 | 1 | 0 | 59 |
| bla | 11 | 3 | 1 | 5 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 24 |
| bla | 5 | 2 | 2 | 2 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 14 |
| bla | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| bla | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| bla | 14 | 4 | 7 | 0 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 32 |
| bla | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| blaVIM | 4 | 6 | 2 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 16 |