| Literature DB >> 31810199 |
Ibon Alkorta1, José Elguero1, Manuel Yáñez2, Otilia Mó2, M Merced Montero-Campillo2.
Abstract
Relativistic effects are found to be important for the estimation of NMR parameters in halogen-bonded complexes, mainly when they involve the heavier elements, iodine and astatine. A detailed study of 60 binary complexes formed between dihalogen molecules (XY with X, Y = F, Cl, Br, I and At) and four Lewis bases (NH3, H2O, PH3 and SH2) was carried out at the MP2/aug-cc-pVTZ/aug-cc-pVTZ-PP computational level to show the extent of these effects. The NMR parameters (shielding and nuclear quadrupolar coupling constants) were computed using the relativistic Hamiltonian ZORA and compared to the values obtained with a non-relativistic Hamiltonian. The results show a mixture of the importance of the relativistic corrections as both the size of the halogen atom and the proximity of this atom to the basic site of the Lewis base increase.Entities:
Keywords: NMR; absolute shieldings; astatine; halogen bonding; nuclear quadrupolar coupling constants; relativistic effects
Mesh:
Substances:
Year: 2019 PMID: 31810199 PMCID: PMC6930553 DOI: 10.3390/molecules24234399
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Schematic representation of the complexes studied. (X, Y = F, Cl, Br, I, and At).
Interatomic distances (Å) and σ-hole values (au) in the isolated X-Y dihalogen molecules.
| X-Y Distance | σ-Hole | |||
|---|---|---|---|---|
| X-Y | Calculated | Experimental [ | X | Y |
| F2 | 1.401 | 1.4119 | 0.0211 | 0.0211 |
| FCl | 1.638 | 1.6283 | −0.0125 * | 0.0762 |
| Cl2 | 1.999 | 1.9879 | 0.0434 | 0.0434 |
| FBr | 1.758 | 1.7589 | 0.0162 | 0.0790 |
| ClBr | 2.138 | 2.1360 | 0.0320 | 0.0597 |
| Br2 | 2.279 | 2.2811 | 0.0485 | 0.0485 |
| FI | 1.920 | 1.9098 | −0.0354 * | 0.1103 |
| ClI | 2.321 | 2.3209 | 0.0162 | 0.0790 |
| BrI | 2.465 | 2.4690 | 0.0320 | 0.0686 |
| I2 | 2.663 | 2.6655 | 0.0521 | 0.0521 |
| FAt | 2.006 | −0.0454 * | 0.1310 | |
| ClAt | 2.407 | 0.0063 | 0.0980 | |
| BrAt | 2.550 | 0.0217 | 0.0867 | |
| IAt | 2.749 | 0.0419 | 0.0692 | |
| At2 | 2.834 | 0.0582 | 0.0582 | |
* These values correspond to local maxima along the F-Y bond.
Figure 2Molecular electrostatic potential (MEP) on the 0.001 a.u. electron density isosurface of the ClBr and I2 molecules. The location of the σ-hole is indicated with a black dot. The color code range between values > 0.015 au in blue and <−0.010 au in red.
Experimental and calculated values of the nuclear quadrupole coupling constants (NQCC) (MHz) with and without the relativistic ZORA Hamiltonian of the isolated X-Y dihalogen molecules. NR stands for non-relativistic.
| X Atom | Y Atom | |||||||
|---|---|---|---|---|---|---|---|---|
| X-Y | Nuclei | Exp. [ | ZORA | NR | Nuclei | Exp. [ | ZORA | NR |
| F2 | 19F | a | 19F | |||||
| FCl | 19F | 35Cl | −145.87182 | −146.45 | −145.46 | |||
| Cl2. | 35Cl | −115.0 | −113.27 | −112.42 | 35Cl | −115.0 | −113.27 | −112.42 |
| FBr | 19F | 79Br | +1086.89197 | 1115.10 | 1060.86 | |||
| ClBr | 35Cl | −102.378 | −103.50 | −103.05 | 79Br | +875.078 | 903.353 | 857.40 |
| Br2 | 79Br | +810.0 | 836.21 | 792.81 | 79Br | +810.0 | 836.21 | 792.80 |
| FI | 19F | 127I | −3440.748 | −3489.90 | −3118.75 | |||
| ClI | 35Cl | −85.8 | −87.2248 | −88.17 | 127I | −2929.0 | −2975.69 | −2638.75 |
| BrI | 79Br | +722.0 | 722.50 | 690.58 | 127I | −2731.0 | −2801.56 | −2466.99 |
| I2 | 127I | −2452.5837 | −2509.26 | −2195.70 | 127I | −2452.5837 | −2509.23 | −2195.66 |
| FAt | 19F | 210At | −3553.36 | −2788.80 | ||||
| ClAt | 35Cl | −71.0026 | −80.93 | 210At | −3105.21 | −212.80 | ||
| BrAt | 79Br | 600.699 | 639.03 | 210At | −3035.26 | −2257.50 | ||
| IAt | 127I | −2172.51 | −2049.92 | 210At | −2738.91 | −2025.54 | ||
| At2 | 210At | −2634.25 | −1898.71 | 210At | −2634.25 | −1898.71 | ||
a 19F has a nullvalue of the nuclear quadrupole moment and consequently the NQCC is always 0.0 MHz.
Figure 3Experimental vs. calculated NQCC parameters (MHz). The fitted linear relationships between the experimental and calculated values are shown.
Dissociation energies (De, kJ·mol−1) of the XY: Base complexes.
| XY | Base = NH3 | PH3 | H2O | SH2 |
|---|---|---|---|---|
| F2 | 8.5 | 5.6 | 6.0 | 5.6 |
| FCl | 49.5 | 50.9 | 23.4 | 25.8 |
| Cl2 | 22.9 | 14.4 | 13.2 | 13.6 |
| FBr | 70.2 | 65.9 | 35.0 | 40.1 |
| ClBr | 42.2 | 31.5 | 22.2 | 24.0 |
| Br2 | 36.0 | 26.0 | 19.4 | 21.3 |
| FI | 82.8 | 71.8 | 44.4 | 48.9 |
| ClI | 59.8 | 46.2 | 31.7 | 34.3 |
| BrI | 53.3 | 40.1 | 28.5 | 30.9 |
| I2 | 42.4 | 30.4 | 23.2 | 25.1 |
| FAt | 97.7 | 87.4 | 55.8 | 61.6 |
| ClAt | 78.7 | 66.6 | 43.8 | 48.4 |
| BrAt | 72.2 | 60.0 | 40.0 | 44.4 |
| IAt | 61.3 | 49.2 | 34.2 | 37.9 |
| At2 | 57.1 | 46.0 | 32.0 | 35.8 |
Fitted N (nucleophilicity) and E (electrophilicity) values using the values gathered in Table 3 and Equation (3). The values described in the literature for some of these molecules are also included.
| Ref. [ | Ref. [ | ||
|---|---|---|---|
| NH3 | 8.65 | 7.52 | 11.5 |
| PH3 | 7.32 | 3.12 | 4.4 |
| H2O | 4.70 | 4.89 | 10.0 |
| SH2 | 5.19 | 3.43 | 4.8 |
|
| |||
| F2 | 0.97 | 1.13 | |
| FCl | 5.89 | 5.18 | |
| Cl2 | 2.46 | 2.71 | |
| FBr | 8.24 | - | |
| ClBr | 4.65 | 4.77 | |
| Br2 | 3.96 | 4.40 | |
| FI | 9.61 | - | |
| ClI | 6.66 | - | |
| BrI | 5.91 | - | |
| I2 | 4.67 | - | |
| FAt | 11.65 | - | |
| ClAt | 9.16 | - | |
| BrAt | 8.35 | - | |
| IAt | 7.03 | - | |
| At2 | 6.58 | - |
Figure 4De vs. σ-hole in the X-I: Base (up) and X-At: Base (down) complexes as a function of the Base.
Halogen bond distances (Å) for the XY: Base complexes.
| Calculated | Experimental | |||||||
|---|---|---|---|---|---|---|---|---|
| XY | NH3 | PH3 | H2O | SH2 | NH3 | PH3 | H2O | SH2 |
| F2 | 2.594 | 3.048 | 2.649 | 3.021 | 2.708 [ | 2.719 [ | 3.200 [ | |
| FCl | 2.233 | 2.659 | 2.517 | 2.721 | 2.370 [ | 2.611 [ | 2.857 [ | |
| Cl2 | 2.592 | 3.050 | 2.774 | 3.100 | 2.730 [ | 3.240 [ | 3.249 [ | |
| FBr | 2.293 | 2.389 | 2.493 | 2.720 | ||||
| ClBr | 2.469 | 2.659 | 2.698 | 2.972 | 2.628 [ | 3.096 [ | ||
| Br2 | 2.538 | 2.836 | 2.757 | 3.045 | 2.720 [ | |||
| FI | 2.443 | 2.642 | 2.585 | 2.876 | ||||
| ClI | 2.540 | 2.792 | 2.730 | 3.032 | 2.711 [ | 2.963 [ | 2.828 [ | 3.154 [ |
| BrI | 2.582 | 2.868 | 2.781 | 3.087 | ||||
| I2 | 2.672 | 3.033 | 2.869 | 3.190 | ||||
| FAt | 2.496 | 2.721 | 2.593 | 2.903 | ||||
| ClAt | 2.554 | 2.802 | 2.689 | 3.003 | ||||
| BrAt | 2.582 | 2.845 | 2.729 | 3.041 | ||||
| IAt | 2.640 | 2.939 | 2.799 | 3.116 | ||||
| At2 | 2.667 | 2.981 | 2.828 | 3.146 | ||||
R2 values for the linear correlations between De and the halogen bond distance.
| Base | X-Br:Base | X-I:Base | X-At:Base |
|---|---|---|---|
| NH3 | 0.989 | 0.967 | 0.975 |
| PH3 | 0.926 | 0.918 | 0.946 |
| H2O | 0.998 | 0.989 | 0.987 |
| SH2 | 0.994 | 0.979 | 0.984 |
Absolute chemical shielding (ppm) of the atom of the base involved in the interaction. The difference (∆) between the non-relativistic (NR) and relativistic (ZORA) results is also listed.
| NH3 Complexes (15N NMR) | PH3 Complexes (31P NMR) | |||||
|---|---|---|---|---|---|---|
| XY | NR | ZORA | Δ | NR | ZORA | Δ |
| - | 259.67 | 260.59 | 0.92 | 569.22 | 580.5 | 11.28 |
| F2 | 238.03 | 239.46 | 1.43 | 538.58 | 550.72 | 12.14 |
| FCl | 222.7 | 226.35 | 3.65 | 444.03 | 463.76 | 19.73 |
| Cl2 | 230.4 | 232.41 | 2.01 | 531.28 | 544.73 | 13.45 |
| FBr | 229.76 | 245.21 | 15.45 | 454.34 | 500.82 | 46.48 |
| ClBr | 225.08 | 232.7 | 7.62 | 493.61 | 523.33 | 29.72 |
| Br2 | 225.15 | 233.9 | 8.75 | 510.84 | 544.79 | 33.95 |
| FI | 237.04 | 272.69 | 35.65 | 465.54 | 558.92 | 93.38 |
| ClI | 227.13 | 246.29 | 19.16 | 494.14 | 549.38 | 55.24 |
| BrI | 224.83 | 241.62 | 16.79 | 504.27 | 555.62 | 51.35 |
| I2 | 222.67 | 238.15 | 15.48 | 520.59 | 568.36 | 47.77 |
| FAt | 241.56 | 293.55 | 51.99 | 472.31 | 619.06 | 146.75 |
| ClAt | 230.24 | 258.86 | 28.62 | 496.22 | 573.18 | 76.96 |
| BrAt | 227.03 | 253.38 | 26.35 | 504.9 | 573.96 | 69.06 |
| IAt | 222.32 | 249.37 | 27.05 | 518.22 | 585.65 | 67.43 |
| At2 | 220.25 | 237.28 | 17.03 | 525.75 | 586.92 | 61.17 |
16O and 32S absolute shieldings.
| H2O Complexes (16O NMR) | SH2 Complexes (32S NMR) | |||||
|---|---|---|---|---|---|---|
| XY | NR | ZORA | Δ | NR | ZORA | Δ |
| - | 326.51 | 328.15 | 1.64 | 708.5 | 723.73 | 15.23 |
| F2 | 311.27 | 312.88 | 1.61 | 660.08 | 674.88 | 14.80 |
| FCl | 302.28 | 304.79 | 2.51 | 633.48 | 649.49 | 16.01 |
| Cl2 | 304.16 | 306.01 | 1.85 | 659.70 | 674.74 | 15.04 |
| FBr | 308.26 | 316.74 | 8.48 | 636.66 | 659.18 | 22.52 |
| ClBr | 300.21 | 303.96 | 3.75 | 646.51 | 664.01 | 17.50 |
| Br2 | 299.46 | 303.58 | 4.12 | 647.36 | 663.65 | 16.29 |
| FI | 317.13 | 337.31 | 20.18 | 649.47 | 682.55 | 33.08 |
| ClI | 300.14 | 308.94 | 8.8 | 645.90 | 669.24 | 23.34 |
| BrI | 297.5 | 305.53 | 8.03 | 644.13 | 665.72 | 21.59 |
| I2 | 294.91 | 302.81 | 7.9 | 642.76 | 661.24 | 18.48 |
| FAt | 322.85 | 341 | 18.15 | 654.03 | 693.74 | 39.71 |
| ClAt | 302.38 | 311.67 | 9.29 | 645.26 | 678.32 | 33.06 |
| BrAt | 297.8 | 308.72 | 10.92 | 641.84 | 676.2 | 34.36 |
| IAt | 291.66 | 307.79 | 16.13 | 636.52 | 673.34 | 36.82 |
| At2 | 288.79 | 298.26 | 9.47 | 633.27 | 655.14 | 21.87 |
Figure 5Relativistic effect on the chemical shielding, Δ, of the base on I: Base and At: Base interactions vs. the intermolecular distance.
(a)
| XY | X Nuclei | Base = NH3 | PH3 | H2O | SH2 |
|---|---|---|---|---|---|
| F2 | 19F | - | - | - | - |
| FCl | 19F | - | - | - | - |
| Cl2 | 35Cl | −96.67 | −101.60 | −106.45 | −103.33 |
| FBr | 19F | - | - | - | - |
| ClBr | 35Cl | −80.73 | −75.90 | −94.06 | −89.17 |
| Br2 | 79Br | 666.62 | 669.73 | 766.09 | 731.14 |
| FI | 19F | - | - | - | - |
| ClI | 35Cl | −65.83 | −62.74 | −77.20 | −73.07 |
| BrI | 79Br | 550.33 | 539.92 | 643.91 | 611.72 |
| I2 | 127I | −1978.37 | −2027.60 | −2275.95 | −2182.00 |
| FAt | 19F | - | - | - | - |
| ClAt | 35Cl | −53.71 | −51.30 | −61.91 | −58.97 |
| BrAt | 79Br | 453.45 | 439.72 | 524.63 | 500.39 |
| IAt | 127I | −1656.06 | −1651.19 | −1912.51 | −1833.11 |
| At2 | 210At | −2020.99 | −2009.78 | −2220.53 | −1803.44 |
(b)
| XY | Y-Nuclei | Base = NH3 | PH3 | H2O | SH2 |
|---|---|---|---|---|---|
| F2 | 19F | - | - | - | - |
| FCl | 35Cl | −136.74 | −104.16 | −144.73 | −136.22 |
| Cl2 | 35Cl | −113.90 | −111.54 | −114.86 | −111.80 |
| FBr | 79Br | 1031.94 | 861.95 | 1093.30 | 1017.95 |
| ClBr | 79Br | 898.39 | 832.30 | 914.18 | 877.07 |
| Br2 | 79Br | 841.11 | 799.32 | 850.08 | 818.11 |
| FI | 127I | −3292.39 | −2920.15 | −3453.39 | −3239.75 |
| ClI | 127I | −2968.23 | −2745.65 | −3024.02 | −2888.87 |
| BrI | 127I | −2823.84 | −2641.50 | −2859.06 | −2738.31 |
| I2 | 127I | −2583.75 | −2457.53 | −2582.64 | −2490.00 |
| FAt | 210At | −3603.13 | −3254.61 | −3613.52 | −3400.17 |
| ClAt | 210At | −3275.35 | −3054.35 | −3209.75 | −3108.67 |
| BrAt | 210At | −3056.78 | −2950.25 | −3129.21 | −3071.55 |
| IAt | 210At | −2977.79 | −2799.42 | −2883.22 | −2768.93 |
| At2 | 210At | −2921.46 | −2688.23 | −2748.77 | −2588.70 |