Literature DB >> 31805237

Benchmarking Electronic Structure Methods for Accurate Fixed-Charge Electrostatic Models.

Alex Zhou, Michael Schauperl1, Paul S Nerenberg.   

Abstract

The accuracy of classical molecular mechanics (MM) force fields used for condensed phase molecular simulations depends strongly on the accuracy of modeling nonbonded interactions between atoms, such as electrostatic interactions. Some popular fixed-charge MM force fields use partial atomic charges derived from gas phase electronic structure calculations using the Hartree-Fock (HF) method with the relatively small 6-31G* basis set (HF/6-31G*). It is generally believed that HF/6-31G* generates fortuitously overpolarized electron distributions, as would be expected in the higher dielectric environment of the condensed phase. Using a benchmark set of 47 molecules, we show that HF/6-31G* overpolarizes molecules by just under 10% on average with respect to experimental gas phase dipole moments. The overpolarization of this method/basis set combination varies significantly though and, in some cases, even leads to molecular dipole moments that are lower than experimental gas phase measurements. We further demonstrate that using computationally inexpensive density functional theory (DFT) methods, together with appropriate augmented basis sets and a continuum solvent model, can yield molecular dipole moments that are both more strongly and more uniformly overpolarized. These data suggest that these methods-or ones similar to them-should be adopted for the derivation of accurate partial atomic charges for next-generation MM force fields.

Year:  2019        PMID: 31805237     DOI: 10.1021/acs.jcim.9b00962

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  4 in total

1.  Data-driven analysis of the number of Lennard-Jones types needed in a force field.

Authors:  Michael Schauperl; Sophie Kantonen; Lee-Ping Wang; Michael K Gilson
Journal:  Commun Chem       Date:  2020-11-13

2.  A Simple Method for Including Polarization Effects in Solvation Free Energy Calculations When Using Fixed-Charge Force Fields: Alchemically Polarized Charges.

Authors:  Braden D Kelly; William R Smith
Journal:  ACS Omega       Date:  2020-07-07

3.  SAMPL7 Host-Guest Challenge Overview: assessing the reliability of polarizable and non-polarizable methods for binding free energy calculations.

Authors:  Martin Amezcua; Léa El Khoury; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2021-01-04       Impact factor: 3.686

4.  Solvation Thermodynamics in Different Solvents: Water-Chloroform Partition Coefficients from Grid Inhomogeneous Solvation Theory.

Authors:  Johannes Kraml; Florian Hofer; Anna S Kamenik; Franz Waibl; Ursula Kahler; Michael Schauperl; Klaus R Liedl
Journal:  J Chem Inf Model       Date:  2020-07-20       Impact factor: 6.162

  4 in total

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