Literature DB >> 31799027

Nonparametric empirical Bayesian framework for fluorescence-lifetime imaging microscopy.

Shulei Wang1,2, Jenu V Chacko3, Abdul K Sagar3, Kevin W Eliceiri3,4, Ming Yuan5,6.   

Abstract

Fluorescence lifetime imaging microscopy (FLIM) is a powerful imaging tool used to study the molecular environment of flurophores. In time domain FLIM, extracting lifetime from fluorophores signals entails fitting data to a decaying exponential distribution function. However, most existing techniques for this purpose need large amounts of photons at each pixel and a long computation time, thus making it difficult to obtain reliable inference in applications requiring either short acquisition or minimal computation time. In this work, we introduce a new nonparametric empirical Bayesian framework for FLIM data analysis (NEB-FLIM), leading to both improved pixel-wise lifetime estimation and a more robust and computationally efficient integral property inference. This framework is developed based on a newly proposed hierarchical statistical model for FLIM data and adopts a novel nonparametric maximum likelihood estimator to estimate the prior distribution. To demonstrate the merit of the proposed framework, we applied it on both simulated and real biological datasets and compared it with previous classical methods on these datasets.
© 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Entities:  

Year:  2019        PMID: 31799027      PMCID: PMC6865096          DOI: 10.1364/BOE.10.005497

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  20 in total

1.  What Is the Best Method to Fit Time-Resolved Data? A Comparison of the Residual Minimization and the Maximum Likelihood Techniques As Applied to Experimental Time-Correlated, Single-Photon Counting Data.

Authors:  Kalyan Santra; Jinchun Zhan; Xueyu Song; Emily A Smith; Namrata Vaswani; Jacob W Petrich
Journal:  J Phys Chem B       Date:  2016-02-22       Impact factor: 2.991

2.  Metabolic mapping of MCF10A human breast cells via multiphoton fluorescence lifetime imaging of the coenzyme NADH.

Authors:  Damian K Bird; Long Yan; Kristin M Vrotsos; Kevin W Eliceiri; Emily M Vaughan; Patricia J Keely; John G White; Nirmala Ramanujam
Journal:  Cancer Res       Date:  2005-10-01       Impact factor: 12.701

3.  Photon Counting Data Analysis: Application of the Maximum Likelihood and Related Methods for the Determination of Lifetimes in Mixtures of Rose Bengal and Rhodamine B.

Authors:  Kalyan Santra; Emily A Smith; Jacob W Petrich; Xueyu Song
Journal:  J Phys Chem A       Date:  2016-12-22       Impact factor: 2.781

4.  Two modeling strategies for empirical Bayes estimation.

Authors:  Bradley Efron
Journal:  Stat Sci       Date:  2014-05       Impact factor: 2.901

5.  In vivo multiphoton fluorescence lifetime imaging of protein-bound and free nicotinamide adenine dinucleotide in normal and precancerous epithelia.

Authors:  Melissa C Skala; Kristin M Riching; Damian K Bird; Annette Gendron-Fitzpatrick; Jens Eickhoff; Kevin W Eliceiri; Patricia J Keely; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2007 Mar-Apr       Impact factor: 3.170

6.  Optical metabolic imaging identifies glycolytic levels, subtypes, and early-treatment response in breast cancer.

Authors:  Alex J Walsh; Rebecca S Cook; H Charles Manning; Donna J Hicks; Alec Lafontant; Carlos L Arteaga; Melissa C Skala
Journal:  Cancer Res       Date:  2013-10-15       Impact factor: 12.701

7.  A Bayesian method for single molecule, fluorescence burst analysis.

Authors:  P R Barber; S M Ameer-Beg; S Pathmananthan; M Rowley; A C C Coolen
Journal:  Biomed Opt Express       Date:  2010-10-12       Impact factor: 3.732

8.  Developing and Testing a Bayesian Analysis of Fluorescence Lifetime Measurements.

Authors:  Bryan Kaye; Peter J Foster; Tae Yeon Yoo; Daniel J Needleman
Journal:  PLoS One       Date:  2017-01-06       Impact factor: 3.240

9.  Robust Bayesian Fluorescence Lifetime Estimation, Decay Model Selection and Instrument Response Determination for Low-Intensity FLIM Imaging.

Authors:  Mark I Rowley; Anthonius C C Coolen; Borivoj Vojnovic; Paul R Barber
Journal:  PLoS One       Date:  2016-06-29       Impact factor: 3.240

10.  Rapid global fitting of large fluorescence lifetime imaging microscopy datasets.

Authors:  Sean C Warren; Anca Margineanu; Dominic Alibhai; Douglas J Kelly; Clifford Talbot; Yuriy Alexandrov; Ian Munro; Matilda Katan; Chris Dunsby; Paul M W French
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

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  6 in total

1.  Complex wavelet filter improves FLIM phasors for photon starved imaging experiments.

Authors:  P Wang; F Hecht; G Ossato; S Tille; S E Fraser; J A Junge
Journal:  Biomed Opt Express       Date:  2021-05-17       Impact factor: 3.732

2.  High Resolution Fluorescence Lifetime Maps from Minimal Photon Counts.

Authors:  Mohamadreza Fazel; Sina Jazani; Lorenzo Scipioni; Alexander Vallmitjana; Enrico Gratton; Michelle A Digman; Steve Pressé
Journal:  ACS Photonics       Date:  2022-02-10       Impact factor: 7.077

3.  Fast Analysis of Time-Domain Fluorescence Lifetime Imaging via Extreme Learning Machine.

Authors:  Zhenya Zang; Dong Xiao; Quan Wang; Zinuo Li; Wujun Xie; Yu Chen; David Day Uei Li
Journal:  Sensors (Basel)       Date:  2022-05-15       Impact factor: 3.847

4.  Fluorescence lifetime imaging microscopy: fundamentals and advances in instrumentation, analysis, and applications.

Authors:  Rupsa Datta; Tiffany M Heaster; Joe T Sharick; Amani A Gillette; Melissa C Skala
Journal:  J Biomed Opt       Date:  2020-05       Impact factor: 3.170

5.  Label-free sensing of cells with fluorescence lifetime imaging: The quest for metabolic heterogeneity.

Authors:  Evgeny A Shirshin; Marina V Shirmanova; Alexey V Gayer; Maria M Lukina; Elena E Nikonova; Boris P Yakimov; Gleb S Budylin; Varvara V Dudenkova; Nadezhda I Ignatova; Dmitry V Komarov; Vladislav V Yakovlev; Wolfgang Becker; Elena V Zagaynova; Vladislav I Shcheslavskiy; Marlan O Scully
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 12.779

6.  A method for the fast and photon-efficient analysis of time-domain fluorescence lifetime image data over large dynamic ranges.

Authors:  Romain F Laine; Chetan Poudel; Clemens F Kaminski
Journal:  J Microsc       Date:  2022-06-23       Impact factor: 1.952

  6 in total

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