| Literature DB >> 31798609 |
Inger Åhman1, Sung-Yong Kim1, Li-Hua Zhu1.
Abstract
Aphids are phloem sap-feeding insects common as pests in various crops. Here we review 62 omics studies of aphid/plant interactions to search for indications of how aphids may manipulate the plants to make them more suitable as hosts, i.e. more susceptible. Our aim is to try to reveal host plant susceptibility (S) genes, knowledge which can be exploited for making a plant more resistant to its pest by using new plant breeding techniques to knock out or down such S genes. S genes may be of two types, those that are involved in reducing functional plant defense and those involved in further increasing plant factors that are positive to the aphid, such as facilitated access to food or improved nutritional quality. Approximately 40% of the omics studies we have reviewed indicate how aphids may modify their host to their advantage. To exploit knowledge obtained so far, we suggest knocking out/down candidate aphid S genes using CRISPR/Cas9 or RNAi techniques in crops to evaluate if this will be sufficient to keep the aphid pest at economically viable levels without severe pleiotropic effects. As a complement, we also propose functional studies of recessively inherited resistance previously discovered in some aphid-crop combinations, to potentially identify new types of S genes that later could be knocked out or down also in other crops to improve their resistance to aphids.Entities:
Keywords: CRISPR/Cas9; RNAi; aphid; gene editing; omics; plant defense; plant resistance; susceptibility gene
Year: 2019 PMID: 31798609 PMCID: PMC6874142 DOI: 10.3389/fpls.2019.01452
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Global studies of plant genes as DNA contigs, RNA sequences, probes, proteins, or metabolites regulated by aphid feeding.
| Plant species | Aphid species | Reference | Method | No. of “genes” | Plant type | Comments |
|---|---|---|---|---|---|---|
| Alfalfa |
|
| RNAseq | 184,892 | 1 Res/1 Sus | SA, JA, and flavonoid pathways induced 72 h |
|
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| Metabolomics | 8,455 | 2 Res/2 Sus species | SUS: Compounds in alfalfa downregulated by alfalfa biotype but not by clover and pea biotype of the aphid, e.g. a triterpene saponin 48 h | |
| Apple |
|
| cDNA-AFLP | 1 Res/1 Sus | Signaling and photosynthesis genes more regulated in Res 72 h | |
|
|
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| Micro- and macroarray | 105 | 1 Sus | Oxidative stress, PR proteins, signaling SUS: nutrient sink-related sugar symporter (SUS): |
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| Microarray | 23,750 | 1 Sus | SUS: metabolism genes downregulated 72 h | |
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| Microarray | 22,500 | 1 Sus | SUS: arabinogalactan protein gene downregulated, photosynthesis-related gene upregulated indicative of sink 2, 36 h | |
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| Microarray | 2,158 | 3 Sus | SUS: downregulation of genes relating to hydrolysis of glucosinolates 72 h | |
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| Microarray | 26,604 | 1 moderately Sus + 1 mutant | Camalexin related to resistance 6, 12, 24, 48 h | |
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| Microarray | 22,500 | 1 Sus | High overlap between aphid- and saliva-induced transcripts. Defense induced in infested leaves, not in systemic 24 h | |
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| Microarray | 26,604 | 1 Sus + 2 mutants | JA signaling related to defense 72 h | |
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| Microarray | 38,463 | 1 Sus | SUS: Downregulated JA pathway, secondary compound transporters, flavonoid synthesis, and chitin-responsive transcription factors; increased cell wall loosening 5 h | |
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| Metabolomics | 1 Sus | Low aphid density caused no changes in JA and SA levels, aliphatic glucosinolates were reduced 3 days | ||
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| Microarray | 26,604 | 1 Sus | Ethylene-related genes upregulated, aliphatic glucosinolate genes downregulated 72 h | |
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| Microarray | 43,803 | 1 Sus + mutants | Infested and non-infested leaves compared SUS: ABA and redox-responsive transcription factor 6, 24, 48 h | |
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| Microarray | 26,090 | 1 Sus | Little overlap between gene regulation by the two aphid species 1 week infestation then analyzed 6, 24 h after aphid removal | |
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| Microarray | 43,408 | 1 Host | Genes that show opposite regulation in host, non-host, or poor-host: SUS | |
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| Proteomics | 574 | 1 Sus | Several photosynthesis proteins regulated 3 days | |
| Barley |
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| Microarray | > 21,000 | 1 Tol/1 Sus | No differences in aphid performance. ROS scavenging more efficient in Tol 3 h, 3 days, 6 days |
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| Microarray | > 21,000 | 2 moderately Res/2 Sus | SUS: two sugar transporters upregulated in all four and one in the two Sus indicating aphids inducing leaf sink (SUS): certain | |
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| Microarray | 22,740 | 1 Sus | > 1,000 transcripts differentially regulated comparing one aphid biotype to another, altogether four biotypes 5 days | |
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| Microarray | 60,000 | 1 Host | Poor-host interaction led to stronger induction than host interaction 3, 24 h | |
| Barrel medic |
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| Proteomics | 1,592 | 1 Res/1 Sus NILs |
|
| Black mustard |
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| Microarray | 26,173 | Sus population | (SUS): Suppression of |
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| Metabolomics | Sus population | Local effects stronger than systemic effects. Locally aphids induced various sugars 72 h | ||
| Cabbage |
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| Microarray | 26,173 | 1 moderately Res/1 Sus | SUS: Upregulation of aquaporin genes might increase access to nutrients in phloem 48 h |
| Celery |
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| Macroarray SSH | 891 | 1 Sus | Systemic response in phloem tissue analyzed SUS: Thiamine (vitamin B1) biosynthesis gene strongly upregulated, cell wall and water channel genes regulated for control of turgor pressure 3, 7 days |
| Corn |
|
| RNASeq Metabolomics | 20,000 | 1 Sus + mutants | SUS: Temporal gene regulation patterns ruled by the aphid, ABA-related genes upregulated to maintain water potential, oxylipin genes up-regulated to provide lipid nutrients, cytokinin-related genes downregulated to promote senescence to release amino acids 2, 4, 8, 24, 48, 96 h |
| Cotton |
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| RNASeq | 14,810 | 1 Sus | SUS: genes regulated to increase sugar and amino acid concentration in phloem, to advance senescence, to hinder sieve tube clogging and to suppress ET defense pathway 2, 24 h |
|
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| Metabolomics | 1 Sus | Systemically induced leaves investigated. SA level reduced 7–8 days | ||
| Cucumber |
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| RNASeq | 1 Res | Several candidate genes for aphid resistance 0, 2, 4, 6, 8 days | |
| Pea |
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| Proteomics | 1 moderately Res/1 Sus | SUS: Amino acid synthesis, photosynthesis and carbohydrate metabolism proteins abundant in infested Sus tissue 24, 84 h | |
| Potato |
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| Microarray | 3,570 | 1 Res wild species | SUS: genes regulated to switch the tissue from source to sink; transporters, protein metabolism 96 h |
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| Microarray | 3,570 | 1 “Res” = young leaves/1 Sus = old leaves | SUS: SA pathway genes upregulated to hinder JA induction to which aphid is less tolerant, genes regulated to switch the tissue from source to sink, genes for sugar and amino acid transport and mobilization upregulated, downregulation of secondary compound-related genes 96 h | |
| Rose | No species name |
| Proteomics | 2 Res (Tol)?/2 Sus | Aphid-induced tissue compared between Res and Sus (only 9 proteins analyzed) Induction time unknown | |
| Sorghum |
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| Microarray SSH | 672 | 1 Sus | SUS: Induction of SA signaling suppresses JA pathway which is effective as aphid defense (SUS): |
|
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| Microarray SSH | 1 Res/1 Sus | (SUS): | ||
| “Sorghum aphids” |
| AFLP | 1 Res/1 Sus + F2 population | Defense-related genes identified among the 65 differentially expressed 0, 24, 48, 72 h (+2 h) | ||
|
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| RNAseq | 1 Res/1 Sus | SUS: JAZ genes upregulated which are negative regulators of JA-related genes 24 h | ||
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| RNASeq | 1 Res/1 Sus | JA- and ET-related genes upregulated and photosynthesis and peroxidase genes downregulated in Sus 5, 10, 15 days (late sampling) | ||
| Soybean |
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| Microarray | 18,000 | 1 Res/1 Sus | 95 genes specifically regulated in Sus 6, 12 h |
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| Microarray | 22,763 | 1 Res/1 Sus | SUS: JA, ET, and later especially ABA defense pathway genes upregulated to hinder SA synthesis. Gene-silencing regulator upregulated in Sus 24 h, 7 days | |
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| Metabolomics | 1 Res/1 Sus | Phenylpropanoid synthesis precursors more abundant in Sus at 6 h 0, 6, 12, 24, 48, 96 h | ||
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| RNASeq | 1 Tol/1 Sus | (SUS): Nitrate reductase upregulated in Sus and downregulated in Tol 5, 15 days | ||
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| RNASeq Proteomics | 3,445 proteins | 1 Res/1 Sus | NILS with and without | |
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| RNASeq | 1 Res/1 Sus | NILS with and without | ||
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| Microarray | 22 763 | 1 Res/1 Sus | ABA signaling absent interpreted as ABA Sus induction by the aphid overcome by the plant by day 21 after infection SUS: Alternatively, the aphid has stopped ABA induction to allow the plant to produce deterrents to advance aphid migration 21 days | |
| Tobacco |
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| Microarray | 240 | 1 Sus wild species | Local and systemic leaves with and without aphids compared SUS: Glutamate synthase higher expression in local (sink) leaves, downregulation of peroxide-generating germin gene locally 2 days |
|
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| Microarray | 481 | 1 Sus wild species | Only systemic effect analyzed. (SUS): Nitrogen-related genes upregulated 72 h | |
| Tomato |
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| Microarray | 13 440 | 1 Sus | Only systemic effects analyzed SUS: Many JA pathway genes suppressed, N/C ratio increased 5 days |
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| Microarray Proteomics | 21,000 | 1 Sus | SUS: SA and ET pathway genes upregulated may hinder JA upregulation, genes for N transport upregulated 24, 48, 96 h | |
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| Metabolomics | 1 Sus | Volatile and non-volatile substances; methyl salicylate induced, among many others 3 weeks | ||
| Wheat |
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| Microarray SSH | 256 | 1 Res | Gene regulation in genotype with |
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| SSH | Res/Sus 10/10 F2:3 bulked | Gene regulation interpreted in relation to antibiosis and plant tolerance 48 h | ||
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| Microarray | 55,052 | 1 Res/1 Sus | Gene regulation by two aphid biotypes on a | |
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| Microarray | 55,052 | Res/Sus 10/10 F2:4bulked | Many genes upregulated earlier in Res than in Sus. Auxin-related genes upregulated only in Sus 24 h | |
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| EST RT-qPCR | 10 defense 16 meta-bolic | 1 Res = Sus | One aphid biotype compatible with plant genotype and one incompatible. Local and systemic effects analyzed. More gene regulation in local tissue. No indications of source/sink effects. JA-related defense 1, 3, 6, 24 h | |
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| Proteomics | Ca. 500 | 1 Sus | Local and systemic effects analyzed (SUS): More metabolism proteins regulated in systemic than in local tissue, JA-regulated agglutinin downregulated in local tissue at both time points, more SA- than JA-regulated proteins indicates suppression of JA pathway 24 h, 8 days | |
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| Microarray | 55,052 | Res/Sus 8/8 F8 RILs bulked | Bulk with and without | |
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| cDNA AFLP Microarray | 1 Sus/3 NILs | Tugela and Tugela with | ||
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| Proteomics | Ca. 200 | 1 Res/1 Sus | Local and systemic effects analyzed. (SUS): Downregulated proteins not shown since considered not relevant for Res as they may result from aphid manipulation 24 h, 8 days | |
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| Metabolomics | 3 partially Res ( | No systemic effect when non-infested part of the leaves is compared with the infested 24 h | ||
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| Metabolomics | 376 | 1 Sus | Metabolite changes induced by |
Part of the studies infers aphid-induced susceptibility. If authors suggest a susceptibility function it is here remarked as “SUS:” in the “Comments” column, and “(SUS):” if it is interpreted as such by us. Time points for sampling after infestation are also noted.
RNASeq, RNA sequencing; cDNA, complementary DNA; AFLP, Amplified fragment length polymorphism; SSH, Subtractive suppression hybridisation; EST, Expressed sequence tag; RT, Reversed transcript; qPCR, quantitative polymerase chain reaction; Res, Resistant genotype; Sus, Susceptible genotype; Tol, Tolerant genotype; NILs, Near isogenic lines; RILs, Recombinant inbred lines; SA, Salicylic acid; JA, Jasmonic acid; ET, Ethylene and ABA, Abscisic acid hormonal pathways; ROS, Reactive oxygen species; PR, Pathogen-related; HR, Hypersensitive response; M.p., Myzus persicae; R.p., Rhopalosiphum padi.