Literature DB >> 31790919

Transcription through the nucleosome.

Tomoya Kujirai1, Hitoshi Kurumizaka2.   

Abstract

Eukaryotic genomic DNA is wrapped around the histone octamer and forms the nucleosome, which is the basic unit of chromatin. Nevertheless, eukaryotic RNA polymerases transcribe the DNA that is tightly bound to the histone core in the nucleosome. For transcription to proceed on the nucleosome, the RNA polymerases must overcome the tight contacts between histones and DNA during transcription elongation. Here, we review the structural and biochemical studies of the transcription mechanism on the nucleosome, and focus on recent information to understand how RNA polymerases transcribe the genomic DNA in chromatin.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2019        PMID: 31790919     DOI: 10.1016/j.sbi.2019.10.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  19 in total

Review 1.  Causes and consequences of RNA polymerase II stalling during transcript elongation.

Authors:  Melvin Noe Gonzalez; Daniel Blears; Jesper Q Svejstrup
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-18       Impact factor: 94.444

2.  Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.

Authors:  Aziz Ul Ikram; Fei Zhang; Zuntao Xu; Enze Li; Gan Xue; Shiliang Wang; Cheng Zhang; Yachun Yang; Yanhua Su; Yong Ding
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

3.  Aberrant nucleosome organization in mouse SCNT embryos revealed by ULI-MNase-seq.

Authors:  Lingyue Yang; Xiaocui Xu; Ruimin Xu; Chuan Chen; Xiaolei Zhang; Mo Chen; Xiaochen Kou; Yanhong Zhao; Hong Wang; Xiaoyu Liu; Shaorong Gao; Chong Li
Journal:  Stem Cell Reports       Date:  2022-06-23       Impact factor: 7.294

4.  Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers.

Authors:  Jun Xu; Wei Wang; Liang Xu; Jia-Yu Chen; Jenny Chong; Juntaek Oh; Andres E Leschziner; Xiang-Dong Fu; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-28       Impact factor: 11.205

5.  Reconstitution and Purification of Nucleosomes with Recombinant Histones and Purified DNA.

Authors:  Ilana M Nodelman; Ashok Patel; Robert F Levendosky; Gregory D Bowman
Journal:  Curr Protoc Mol Biol       Date:  2020-12

Review 6.  Molecular basis of transcriptional pausing, stalling, and transcription-coupled repair initiation.

Authors:  Juntaek Oh; Jun Xu; Jenny Chong; Dong Wang
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-11-30       Impact factor: 4.490

Review 7.  Collaboration through chromatin: motors of transcription and chromatin structure.

Authors:  Nathan Gamarra; Geeta J Narlikar
Journal:  J Mol Biol       Date:  2021-02-05       Impact factor: 6.151

8.  RNA polymerase I (Pol I) lobe-binding subunit Rpa12.2 promotes RNA cleavage and proofreading.

Authors:  Katrin Schwank; Catharina Schmid; Tobias Fremter; Philipp Milkereit; Joachim Griesenbeck; Herbert Tschochner
Journal:  J Biol Chem       Date:  2022-03-25       Impact factor: 5.486

9.  Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.

Authors:  Rina Hirano; Yasuhiro Arimura; Tomoya Kujirai; Mikihiro Shibata; Aya Okuda; Ken Morishima; Rintaro Inoue; Masaaki Sugiyama; Hitoshi Kurumizaka
Journal:  Commun Biol       Date:  2021-02-12

Review 10.  The SAGA continues: The rise of cis- and trans-histone crosstalk pathways.

Authors:  Brian D Strahl; Scott D Briggs
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-07-06       Impact factor: 4.490

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