Literature DB >> 31789510

Spectroscopic and Computational Comparisons of Thiolate-Ligated Ferric Nonheme Complexes to Cysteine Dioxygenase: Second-Sphere Effects on Substrate (Analogue) Positioning.

Anne A Fischer1, Joshua R Miller2, Richard J Jodts2, Danushka M Ekanayake1, Sergey V Lindeman1, Thomas C Brunold2, Adam T Fiedler1.   

Abstract

Parallel spectroscopic and computational studies of iron(III) cysteine dioxygenase (CDO) and synthetic models are presented. The synthetic complexes utilize the ligand tris(4,5-diphenyl-1-methylimidazol-2-yl)phosphine (Ph2TIP), which mimics the facial three-histidine triad of CDO and other thiol dioxygenases. In addition to the previously reported [FeII(CysOEt)(Ph2TIP)]BPh4 (1; CysOEt is the ethyl ester of anionic l-cysteine), the formation and crystallographic characterization of [FeII(2-MTS)(Ph2TIP)]BPh4 (2) is reported, where the methyl 2-thiosalicylate anion (2-MTS) resembles the substrate of 3-mercaptopropionate dioxygenase (MDO). One-electron chemical oxidation of 1 and 2 yields ferric species that bind cyanide and azide anions, which have been used as spectroscopic probes of O2 binding in prior studies of FeIII-CDO. The six-coordinate FeIII-CN and FeIII-N3 adducts are examined with UV-vis absorption, electron paramagnetic resonance (EPR), and resonance Raman (rRaman) spectroscopies. In addition, UV-vis and rRaman studies of cysteine- and cyanide-bound FeIII-CDO are reported for both the wild-type (WT) enzyme and C93G variant, which lacks the Cys-Tyr cross-link that is present in the second coordination sphere of the WT active site. Density functional theory (DFT) and ab initio calculations are employed to provide geometric and electronic structure descriptions of the synthetic and enzymatic FeIII adducts. In particular, it is shown that the complete active space self-consistent field (CASSCF) method, in tandem with n-electron valence state second-order perturbation theory (NEVPT2), is capable of elucidating the structural basis of subtle shifts in EPR g values for low-spin FeIII species.

Entities:  

Year:  2019        PMID: 31789510      PMCID: PMC6956612          DOI: 10.1021/acs.inorgchem.9b02432

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  58 in total

1.  Evidence for expression of a single distinct form of mammalian cysteine dioxygenase.

Authors:  M H Stipanuk; M Londono; L L Hirschberger; C Hickey; D J Thiel; L Wang
Journal:  Amino Acids       Date:  2003-05-09       Impact factor: 3.520

Review 2.  Quantum chemical calculations of spectroscopic properties of metalloproteins and model compounds: EPR and Mössbauer properties.

Authors:  Frank Neese
Journal:  Curr Opin Chem Biol       Date:  2003-02       Impact factor: 8.822

3.  Identification and characterization of bacterial cysteine dioxygenases: a new route of cysteine degradation for eubacteria.

Authors:  John E Dominy; Chad R Simmons; P Andrew Karplus; Amy M Gehring; Martha H Stipanuk
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

4.  Probing the geometric and electronic structures of the low-temperature azide adduct and the product-inhibited form of oxidized manganese superoxide dismutase.

Authors:  Timothy A Jackson; Anush Karapetian; Anne-Frances Miller; Thomas C Brunold
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

5.  Resonance Raman spectroscopy of nitrile hydratase, a novel iron-sulfur enzyme.

Authors:  B A Brennan; J G Cummings; D B Chase; I M Turner; M J Nelson
Journal:  Biochemistry       Date:  1996-08-06       Impact factor: 3.162

6.  Geometries and electronic structures of cyanide adducts of the non-heme iron active site of superoxide reductases: vibrational and ENDOR studies.

Authors:  Michael D Clay; Tran-Chin Yang; Francis E Jenney; Irene Y Kung; Christopher A Cosper; Rangan Krishnan; Donald M Kurtz; Michael W W Adams; Brian M Hoffman; Michael K Johnson
Journal:  Biochemistry       Date:  2006-01-17       Impact factor: 3.162

7.  Preparation of non-heme {FeNO}7 models of cysteine dioxygenase: sulfur versus nitrogen ligation and photorelease of nitric oxide.

Authors:  Alison C McQuilken; Yang Ha; Kyle D Sutherlin; Maxime A Siegler; Keith O Hodgson; Britt Hedman; Edward I Solomon; Guy N L Jameson; David P Goldberg
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

8.  Discovery and characterization of a second mammalian thiol dioxygenase, cysteamine dioxygenase.

Authors:  John E Dominy; Chad R Simmons; Lawrence L Hirschberger; Jesse Hwang; Relicardo M Coloso; Martha H Stipanuk
Journal:  J Biol Chem       Date:  2007-06-20       Impact factor: 5.157

9.  Formation of a Reactive, Alkyl Thiolate-Ligated FeIII-Superoxo Intermediate Derived from Dioxygen.

Authors:  Maike N Blakely; Maksym A Dedushko; Penny Chaau Yan Poon; Gloria Villar-Acevedo; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2019-01-24       Impact factor: 15.419

10.  Cleavage of a carbon-fluorine bond by an engineered cysteine dioxygenase.

Authors:  Jiasong Li; Wendell P Griffith; Ian Davis; Inchul Shin; Jiangyun Wang; Fahui Li; Yifan Wang; Daniel J Wherritt; Aimin Liu
Journal:  Nat Chem Biol       Date:  2018-06-25       Impact factor: 15.040

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  4 in total

1.  Identification of an Intermediate Species along the Nitrile Hydratase Reaction Pathway by EPR Spectroscopy.

Authors:  Wasantha Lankathilaka Karunagala Pathiranage; Natalie Gumataotao; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2021-11-29       Impact factor: 3.162

2.  Spectroscopic Investigation of Cysteamine Dioxygenase.

Authors:  Rebeca L Fernandez; Stephanie L Dillon; Martha H Stipanuk; Brian G Fox; Thomas C Brunold
Journal:  Biochemistry       Date:  2020-06-22       Impact factor: 3.162

3.  Spectroscopic investigation of iron(III) cysteamine dioxygenase in the presence of substrate (analogs): implications for the nature of substrate-bound reaction intermediates.

Authors:  Rebeca L Fernandez; Nicholas D Juntunen; Brian G Fox; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2021-09-27       Impact factor: 3.358

4.  Electronic structures and spectroscopic signatures of diiron intermediates generated by O2 activation of nonheme iron(II)-thiolate complexes.

Authors:  Danushka M Ekanayake; Dao Pham; Andrew L Probst; Joshua R Miller; Codrina V Popescu; Adam T Fiedler
Journal:  Dalton Trans       Date:  2021-10-19       Impact factor: 4.569

  4 in total

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