Literature DB >> 15683235

Probing the geometric and electronic structures of the low-temperature azide adduct and the product-inhibited form of oxidized manganese superoxide dismutase.

Timothy A Jackson1, Anush Karapetian, Anne-Frances Miller, Thomas C Brunold.   

Abstract

The geometric and electronic structures of the six-coordinate azide adduct of oxidized manganese superoxide dismutase (Mn3+ SOD) that is formed at low temperatures, LT N3-Mn3+ SOD, has been examined in detail through a combined spectroscopic/computational approach. Electronic absorption, circular dichroism (CD), magnetic CD (MCD) and variable-temperature, variable-field (VTVH) MCD spectroscopies were used to determine electronic transition energies and to obtain an estimate of zero-field splitting parameters for LT N3-Mn3+ SOD. These experimental data were utilized in conjunction with semiempirical intermediate neglect of differential overlap/spectroscopic parametrization-configuration interaction (INDO/S-CI) and time-dependent density functional theory (TD-DFT) computations to evaluate hypothetical active-site models of LT N3-Mn3+ SOD generated by constrained DFT geometry optimizations. Collectively, our spectroscopic/computational results indicate that N3- binding to Mn3+ SOD at low temperatures promotes neither protonation of the axial solvent ligand nor reorientation of the redox-active molecular orbital, both of which had been previously suggested. Using the same experimentally validated computational approach, models of the product-inhibited form of MnSOD were also developed and evaluated by their relative energies and TD-DFT-computed absorption spectra. On the basis of our computational results as well as previously published kinetic data, we propose that the product-inhibited form of MnSOD is best described as a side-on peroxo-Mn3+ adduct possessing an axial H2O ligand. Notably, attempts to generate a stable hydroperoxo-Mn3+ SOD species by protonation of the proximal O atom of the hydroperoxo ligand resulted in dissociation of HOO- and eventual H+ transfer from Tyr34 to HOO-, generating deprotonated Tyr34 and H2O2. The implications of these results with respect to the mechanism of O2*- dismutation by MnSOD are discussed.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15683235     DOI: 10.1021/bi048639t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

Review 1.  Superoxide dismutases: ancient enzymes and new insights.

Authors:  Anne-Frances Miller
Journal:  FEBS Lett       Date:  2011-11-10       Impact factor: 4.124

2.  Comparison of two yeast MnSODs: mitochondrial Saccharomyces cerevisiae versus cytosolic Candida albicans.

Authors:  Yuewei Sheng; Troy A Stich; Kevin Barnese; Edith B Gralla; Duilio Cascio; R David Britt; Diane E Cabelli; Joan Selverstone Valentine
Journal:  J Am Chem Soc       Date:  2011-11-30       Impact factor: 15.419

3.  A critical evaluation of DFT, including time-dependent DFT, applied to bioinorganic chemistry.

Authors:  Frank Neese
Journal:  J Biol Inorg Chem       Date:  2006-07-05       Impact factor: 3.358

4.  Contribution of human manganese superoxide dismutase tyrosine 34 to structure and catalysis.

Authors:  J Jefferson P Perry; Amy S Hearn; Diane E Cabelli; Harry S Nick; John A Tainer; David N Silverman
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

Review 5.  Peroxomanganese complexes as an aid to understanding redox-active manganese enzymes.

Authors:  Domenick F Leto; Timothy A Jackson
Journal:  J Biol Inorg Chem       Date:  2013-11-27       Impact factor: 3.358

Review 6.  The structural biochemistry of the superoxide dismutases.

Authors:  J J P Perry; D S Shin; E D Getzoff; J A Tainer
Journal:  Biochim Biophys Acta       Date:  2009-11-13

7.  On the Origins of the Linear Free Energy Relationships: Exploring the Nature of the Off-Diagonal Coupling Elements in S(N)2 Reactions.

Authors:  Edina Rosta; Arieh Warshel
Journal:  J Chem Theory Comput       Date:  2012-03-29       Impact factor: 6.006

8.  Six-coordinate manganese(3+) in catalysis by yeast manganese superoxide dismutase.

Authors:  Yuewei Sheng; Edith Butler Gralla; Mikhail Schumacher; Duilio Cascio; Diane E Cabelli; Joan Selverstone Valentine
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

9.  The structure of the Caenorhabditis elegans manganese superoxide dismutase MnSOD-3-azide complex.

Authors:  Gary J Hunter; Chi H Trinh; Rosalin Bonetta; Emma E Stewart; Diane E Cabelli; Therese Hunter
Journal:  Protein Sci       Date:  2015-08-27       Impact factor: 6.725

Review 10.  Density functional theory.

Authors:  Maylis Orio; Dimitrios A Pantazis; Frank Neese
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.