| Literature DB >> 31788332 |
Zhi-Jun Liu1, Hui-Xia Lin1,2, Qiao Wei1, Qi-Jie Zhang2, Cong-Xin Chen2, Qing-Qing Tao1, Gong-Lu Liu1, Wang Ni1, Aaron D Gitler3, Hong-Fu Li1, Zhi-Ying Wu1.
Abstract
Amyotrophic lateral sclerosis (ALS) is a progressive, fatal neurodegenerative disease characterized by selective impairment of upper and lower motor neurons. We aimed to investigate the genetic spectrum and variability in Chinese patients with ALS. A total of 24 familial ALS (FALS) and 21 early-onset sporadic ALS (SALS) of Chinese ancestry were enrolled. Targeted next-generation sequencing (NGS) was performed in the probands, followed by verification by Sanger sequencing and co-segregation analysis. Clinical features of patients with pathogenic or likely pathogenic variants were present. The mutation frequency of ALS-related genes was then analyzed in Chinese population. In this cohort, 17 known mutations (9 SOD1, 5 FUS, 2 TARDBP and one SETX) were identified in 14 FALS and 6 early-onset SALS. Moreover, 7 novel variants (SOD1 c.112G>C, OPTN c.811C>T, ERBB4 c.965T>A, DCTN1 c.1915C>T, NEFH c.2602G>A, NEK1 c.3622G>A, and TAF15 c.1535G>A) were identified. In southeastern Chinese FALS, the mutation frequency of SOD1, FUS, and TARDBP was 52.9%, 8.8%, 8.8% respectively. In early-onset SALS, FUS mutations were the most common (22.6%). In Chinese ALS cases, p.H47R is most frequent SOD1 mutations, while p.R521 is most common FUS mutation and p.M337V is most common TARDBP mutation. Our results revealed that mutations in SOD1, FUS and TARDBP are the most common cause of Chinese FALS, while FUS mutations are the most common cause of early-onset SALS. The genetic spectrum is different between Chinese ALS and Caucasian ALS. Copyright:Entities:
Keywords: Chinese ancestry; amyotrophic lateral sclerosis; genetic spectrum; mutation; targeted next-generation sequencing
Year: 2019 PMID: 31788332 PMCID: PMC6844596 DOI: 10.14336/AD.2019.0215
Source DB: PubMed Journal: Aging Dis ISSN: 2152-5250 Impact factor: 6.745
Demographic and clinical features of all ALS patients.
| FALS | SALS | Total | |
|---|---|---|---|
| Number of subjects, n | 24 | 21 | 45 |
| M/F, n | 13/11 | 13/8 | 26/19 |
| M/F ratio | 1.2 | 1.6 | 1.4 |
| Age of onset, mean ± SD (y) | |||
| M | 34.5±13.1 | 30.4±13.5 | 32.4±13.2 |
| F | 47.1±14.1 | 31.3±8.1 | 40.4±14.2 |
| Total | 40.3±14.8 | 30.7±11.5 | 35.8±14.1 |
| Site of onset, n | |||
| Upper limbs | 9 | 11 | 20 |
| Lower limbs | 13 | 9 | 22 |
| Chest/abdomen | 1 | 0 | 1 |
| Bulbar | 1 | 1 | 2 |
The known pathogenic variants of ALS-related gene identified in this study.
| Gene | Nucleotide change | Amino acid change | Index cases (family history) |
|---|---|---|---|
| c.13G>T | p.A5S | 1 (Yes) | |
| c.14C>T | p.A5V | 1 (Yes) | |
| c.32G>T | p.G11V | 1 (Yes) | |
| c.49G>T | p.G17C | 1 (Yes) | |
| c.140A>G | p.H47R | 2 (Yes) | |
| c.251A>G | p.D84G | 1 (Yes) | |
| c.319C>G | p.L107V | 1 (Yes) | |
| c.363T>G | p.H121Q | 2 (Yes) | |
| c.449T>C | p.I150T | 1 (Yes) | |
| c.1483C>T | p.R495X | 1 (Yes) | |
| c.1528A>G | p.K510E | 1 (No) | |
| c.1561C>T | p.R521C | 1 (No) | |
| c.1562G>A | p.R521H | 1 (Yes) | |
| c.1574C>T | p.P525L | 2 (No) | |
| c.1009A>G | p.M337V | 1 (Yes) | |
| c.1069G>A | p.G357S | 1 (No) | |
| c.1504C>T | p.R502W | 1 (No) |
The novel variants of ALS-related genes identified in this study.
| Gene | Mutation | 1000G | ESP6500 | ExAC | SIFT | Mutation Taster | Polyphen-2 | CADD | ACMG |
|---|---|---|---|---|---|---|---|---|---|
| c.112G>C (p.G38R) | 0 | 0 | 0 | Damaging | Disease causing | Probably damaging | Damaging | P(PS1+PM1+PM2+PP2+PP3) | |
| c.811C>T (p.R271C) | 0 | 0 | 1.65E-05 | Tolerable | Polymorphism | Benign | Damaging | VUS (PM2) | |
| c.965T>A (p.M322K) | 0 | 0 | 0 | Tolerable | Disease causing | Benign | Tolerable | VUS (PM1+PM2+PP2) | |
| c.1915C>T (p.R639W) | 0 | 0 | 4.99E-05 | Damaging | Disease causing | Probably damaging | Damaging | VUS (PM1+PM2+PP3) | |
| c.2602G>A (p.E868K) | 0 | 0 | 0 | Tolerable | Disease causing | Probably damaging | Tolerable | VUS (PM2+PP3+BP1) | |
| c.3622G>A (p.D1208N) | 0 | 0 | 1.06E-04 | Damaging | Disease causing | Probably damaging | Damaging | VUS (PM2) | |
| c.1535G>A (p.R512Q) | 0 | 7.7E-05 | 9.15E-05 | Damaging | Disease causing | Probably damaging | Damaging | VUS |
Abbreviations: 1000G= 1000 Genomes Project; ESP6500= NHLBI exome sequencing project; ExAC= Exome Aggregation Consortium.
The clinical features of the patients carrying pathogenic variants or likely pathogenic variants.
| Patients | Mutation | Family | Gender | Age at onset (y) | Site of onset | Disease duration (m) | Age of | Predominant features |
|---|---|---|---|---|---|---|---|---|
| 1 | Yes | M | 29 | LL | >4 | alive | LMN dominance | |
| 2 | Yes | F | 60 | UL | 15 | 61 | Classical ALS | |
| 3 | Yes | F | 25 | LL | >10 | alive | Classical ALS | |
| 4 | Yes | M | 49 | Abdomen | 38 | 52 | LMN dominance | |
| 5 | Yes | M | 26 | LL | >120 | alive | LMN dominance; slow progression | |
| 6 | Yes | F | 60 | UL | >180 | alive | LMN; very slow progression | |
| 7 | Yes | M | 53 | LL | >21 | alive | LMN dominance | |
| 8 | Yes | M | 32 | LL | >29 | alive | LMN dominance; slow progression | |
| 9 | Yes | M | 41 | LL | >8 | alive | Classical ALS | |
| 10 | Yes | F | 42 | LL | 51 | 46 | LMN dominance | |
| 11 | Yes | F | 60 | LL | 27 | 62 | Classical ALS | |
| 12 | Yes | F | 36 | LL | 12 | 37 | Classical ALS | |
| 13 | Yes | M | 25 | LL | 9 | 26 | Fast progression | |
| 14 | No | M | 26 | UL | >14 | alive | LMN dominance; cognitive decline | |
| 15 | No | M | 30 | LL | 41 | 33 | LMN dominance | |
| 16 | Yes | F | 36 | UL | >16 | alive | Classical ALS; dropped head syndrome | |
| 17 | No | F | 13 | LL | >40 | alive | Classical ALS | |
| 18 | No | M | 24 | UL | >27 | alive | Classical ALS | |
| 19 | Yes | M | 44 | Bulbar | >156 | alive | LMN dominance; slow progression | |
| 20 | No | M | 65 | UL | >24 | alive | Classical ALS | |
| 21 | No | M | 18 | LL | >84 | alive | LMN dominance; slow progression |
Abbreviations: M=male; F=female; LL= lower limb; UL=upper limb; LMN=lower motor neuron; ALS=amyotrophic lateral sclerosis.
Figure 1.Mutation spectrum of ALS-linked genes in our ALS cohort and Chinese ALS patients. (A) In our ALS cohort, the mutation frequency of SOD1, FUS, TARDBP, and DCTN1 in FALS was 52.9%, 8.8%, 8.8%, and 2.9%, respectively. FUS mutations were the most common cause of early-onset SALS (25.8%), while 61.3% of the cases were not identified pathogenic mutations. (B) The mutation frequency of FUS in Chinese ALS cases. (C) The mutation frequency of TARDBP in Chinese ALS cases. (D) The mutation frequency of SOD1 in Chinese ALS cases.