Literature DB >> 31782165

Advances in genetics toward identifying pathogenic cell states of rheumatoid arthritis.

Tiffany Amariuta1,2,3,4,5, Yang Luo1,2,3,4, Rachel Knevel2,6, Yukinori Okada7,8, Soumya Raychaudhuri1,2,3,4,9.   

Abstract

Rheumatoid arthritis (RA) risk has a large genetic component (~60%) that is still not fully understood. This has hampered the design of effective treatments that could promise lifelong remission. RA is a polygenic disease with 106 known genome-wide significant associated loci and thousands of small effect causal variants. Our current understanding of RA risk has suggested cell-type-specific contexts for causal variants, implicating CD4 + effector memory T cells, as well as monocytes, B cells and stromal fibroblasts. While these cellular states and categories are still mechanistically broad, future studies may identify causal cell subpopulations. These efforts are propelled by advances in single cell profiling. Identification of causal cell subpopulations may accelerate therapeutic intervention to achieve lifelong remission.
© 2019 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  arthritis; genetics; polygenic; rheumatoid; statistical

Year:  2019        PMID: 31782165      PMCID: PMC7047592          DOI: 10.1111/imr.12827

Source DB:  PubMed          Journal:  Immunol Rev        ISSN: 0105-2896            Impact factor:   12.988


  77 in total

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.

Authors:  Eli A Stahl; Soumya Raychaudhuri; Elaine F Remmers; Gang Xie; Stephen Eyre; Brian P Thomson; Yonghong Li; Fina A S Kurreeman; Alexandra Zhernakova; Anne Hinks; Candace Guiducci; Robert Chen; Lars Alfredsson; Christopher I Amos; Kristin G Ardlie; Anne Barton; John Bowes; Elisabeth Brouwer; Noel P Burtt; Joseph J Catanese; Jonathan Coblyn; Marieke J H Coenen; Karen H Costenbader; Lindsey A Criswell; J Bart A Crusius; Jing Cui; Paul I W de Bakker; Philip L De Jager; Bo Ding; Paul Emery; Edward Flynn; Pille Harrison; Lynne J Hocking; Tom W J Huizinga; Daniel L Kastner; Xiayi Ke; Annette T Lee; Xiangdong Liu; Paul Martin; Ann W Morgan; Leonid Padyukov; Marcel D Posthumus; Timothy R D J Radstake; David M Reid; Mark Seielstad; Michael F Seldin; Nancy A Shadick; Sophia Steer; Paul P Tak; Wendy Thomson; Annette H M van der Helm-van Mil; Irene E van der Horst-Bruinsma; C Ellen van der Schoot; Piet L C M van Riel; Michael E Weinblatt; Anthony G Wilson; Gert Jan Wolbink; B Paul Wordsworth; Cisca Wijmenga; Elizabeth W Karlson; Rene E M Toes; Niek de Vries; Ann B Begovich; Jane Worthington; Katherine A Siminovitch; Peter K Gregersen; Lars Klareskog; Robert M Plenge
Journal:  Nat Genet       Date:  2010-05-09       Impact factor: 38.330

3.  The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis.

Authors:  Yi Tian Ting; Jan Petersen; Sri H Ramarathinam; Stephen W Scally; Khai L Loh; Ranjeny Thomas; Anish Suri; Daniel G Baker; Anthony W Purcell; Hugh H Reid; Jamie Rossjohn
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

4.  Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity.

Authors:  Saori Sakaue; Jun Hirata; Yuichi Maeda; Eiryo Kawakami; Takuro Nii; Toshihiro Kishikawa; Kazuyoshi Ishigaki; Chikashi Terao; Ken Suzuki; Masato Akiyama; Naomasa Suita; Tatsuo Masuda; Kotaro Ogawa; Kenichi Yamamoto; Yukihiko Saeki; Masato Matsushita; Maiko Yoshimura; Hidetoshi Matsuoka; Katsunori Ikari; Atsuo Taniguchi; Hisashi Yamanaka; Hideya Kawaji; Timo Lassmann; Masayoshi Itoh; Hiroyuki Yoshitomi; Hiromu Ito; Koichiro Ohmura; Alistair R R Forrest; Yoshihide Hayashizaki; Piero Carninci; Atsushi Kumanogoh; Yoichiro Kamatani; Michiel de Hoon; Kazuhiko Yamamoto; Yukinori Okada
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

5.  Familial aggregation of arthritis-related diseases in seropositive and seronegative rheumatoid arthritis: a register-based case-control study in Sweden.

Authors:  Thomas Frisell; Karin Hellgren; Lars Alfredsson; Soumya Raychaudhuri; Lars Klareskog; Johan Askling
Journal:  Ann Rheum Dis       Date:  2014-12-12       Impact factor: 19.103

6.  Functional haplotypes of PADI4, encoding citrullinating enzyme peptidylarginine deiminase 4, are associated with rheumatoid arthritis.

Authors:  Akari Suzuki; Ryo Yamada; Xiaotian Chang; Shinya Tokuhiro; Tetsuji Sawada; Masakatsu Suzuki; Miyuki Nagasaki; Makiko Nakayama-Hamada; Reimi Kawaida; Mitsuru Ono; Masahiko Ohtsuki; Hidehiko Furukawa; Shinichi Yoshino; Masao Yukioka; Shigeto Tohma; Tsukasa Matsubara; Shigeyuki Wakitani; Ryota Teshima; Yuichi Nishioka; Akihiro Sekine; Aritoshi Iida; Atsushi Takahashi; Tatsuhiko Tsunoda; Yusuke Nakamura; Kazuhiko Yamamoto
Journal:  Nat Genet       Date:  2003-08       Impact factor: 38.330

7.  Twin concordance rates for rheumatoid arthritis: results from a nationwide study.

Authors:  A J Silman; A J MacGregor; W Thomson; S Holligan; D Carthy; A Farhan; W E Ollier
Journal:  Br J Rheumatol       Date:  1993-10

8.  Familial associations of rheumatoid arthritis with autoimmune diseases and related conditions.

Authors:  Kari Hemminki; Xinjun Li; Jan Sundquist; Kristina Sundquist
Journal:  Arthritis Rheum       Date:  2009-03

9.  Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis.

Authors:  Soumya Raychaudhuri; Cynthia Sandor; Eli A Stahl; Jan Freudenberg; Hye-Soon Lee; Xiaoming Jia; Lars Alfredsson; Leonid Padyukov; Lars Klareskog; Jane Worthington; Katherine A Siminovitch; Sang-Cheol Bae; Robert M Plenge; Peter K Gregersen; Paul I W de Bakker
Journal:  Nat Genet       Date:  2012-01-29       Impact factor: 38.330

10.  Comparison of HLA allelic imputation programs.

Authors:  Jason H Karnes; Christian M Shaffer; Lisa Bastarache; Silvana Gaudieri; Andrew M Glazer; Heidi E Steiner; Jonathan D Mosley; Simon Mallal; Joshua C Denny; Elizabeth J Phillips; Dan M Roden
Journal:  PLoS One       Date:  2017-02-16       Impact factor: 3.240

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  7 in total

Review 1.  The immunology of rheumatoid arthritis.

Authors:  Cornelia M Weyand; Jörg J Goronzy
Journal:  Nat Immunol       Date:  2020-11-30       Impact factor: 25.606

2.  Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements.

Authors:  Tiffany Amariuta; Kazuyoshi Ishigaki; Hiroki Sugishita; Tazro Ohta; Masaru Koido; Kushal K Dey; Koichi Matsuda; Yoshinori Murakami; Alkes L Price; Eiryo Kawakami; Chikashi Terao; Soumya Raychaudhuri
Journal:  Nat Genet       Date:  2020-11-30       Impact factor: 38.330

3.  T cell transgressions: Tales of T cell form and function in diverse disease states.

Authors:  Kevin M Harris; Madison A Clements; Andrew J Kwilasz; Linda R Watkins
Journal:  Int Rev Immunol       Date:  2021-06-21       Impact factor: 5.078

Review 4.  Regulating Gut Microbiome: Therapeutic Strategy for Rheumatoid Arthritis During Pregnancy and Lactation.

Authors:  Yao Yao; Xiaoyu Cai; Weidong Fei; Fujia Ren; Fengmei Wang; Xiaofei Luan; Fengying Chen; Caihong Zheng
Journal:  Front Pharmacol       Date:  2020-11-11       Impact factor: 5.810

5.  Association of CD40 Gene Polymorphisms With Systemic Lupus Erythematosus and Rheumatoid Arthritis in a Chinese Han Population.

Authors:  Qi Huang; Wang-Dong Xu; Lin-Chong Su; Xiao-Yan Liu; An-Fang Huang
Journal:  Front Immunol       Date:  2021-04-22       Impact factor: 7.561

6.  Integrative analysis of DNA methylation and gene expression data for the diagnosis and underlying mechanism of Parkinson's disease.

Authors:  Ding Li; Jiaming Liang; Wenbin Guo; Yongna Zhang; Xuan Wu; Wenzhou Zhang
Journal:  Front Aging Neurosci       Date:  2022-08-18       Impact factor: 5.702

Review 7.  Latin American Genes: The Great Forgotten in Rheumatoid Arthritis.

Authors:  Roberto Díaz-Peña; Luis A Quiñones; Patricia Castro-Santos; Josefina Durán; Alejandro Lucia
Journal:  J Pers Med       Date:  2020-10-26
  7 in total

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