Literature DB >> 31781789

Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates.

Jesse Bruijnesteijn1, Natasja G de Groot2, Nel Otting2, Giuseppe Maccari3,4, Lisbeth A Guethlein5, James Robinson4,6, Steven G E Marsh4,6, Lutz Walter7, David H O'Connor8, John A Hammond3, Peter Parham5, Ronald E Bontrop2,9.   

Abstract

The Killer-cell Immunoglobulin-like Receptors (KIR) are encoded by a diverse group of genes, which are characterized by allelic polymorphism, gene duplications, and recombinations, which may generate recombinant entities. The number of reported macaque KIR sequences is steadily increasing, and these data illustrate a gene system that may match or exceed the complexity of the human KIR cluster. This report lists the names of quality controlled and annotated KIR genes/alleles with all the relevant references for two different macaque species: rhesus and cynomolgus macaques. Numerous recombinant KIR genes in these species necessitate a revision of some of the earlier-published nomenclature guidelines. In addition, this report summarizes the latest information on the Immuno Polymorphism Database (IPD)-NHKIR Database, which contains annotated KIR sequences from four non-human primate species.

Entities:  

Keywords:  Cynomolgus; Killer-cell immunoglobulin-like receptors; Macaque species; Nomenclature; Recombinants; Rhesus

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Substances：

Year:  2019        PMID： 31781789     DOI： 10.1007/s00251-019-01135-8

Source DB:  PubMed          Journal:  Immunogenetics        ISSN： 0093-7711            Impact factor:   2.846


  31 in total

1.  Cloning of rhesus monkey killer-cell Ig-like receptors (KIRs) from early pregnancy decidua.

Authors:  R L Grendell; A L Hughes; T G Golos
Journal:  Tissue Antigens       Date:  2001-11

2.  Characterization of rhesus macaque natural killer activity against a rhesus-derived target cell line at the single-cell level.

Authors:  Hanne Andersen; Jeffrey L Rossio; Vicky Coalter; Barbara Poore; Maureen P Martin; Mary Carrington; Jeffrey D Lifson
Journal:  Cell Immunol       Date:  2005-02-17       Impact factor: 4.868

3.  Improved full-length killer cell immunoglobulin-like receptor transcript discovery in Mauritian cynomolgus macaques.

Authors:  Trent M Prall; Michael E Graham; Julie A Karl; Roger W Wiseman; Adam J Ericsen; Muthuswamy Raveendran; R Alan Harris; Donna M Muzny; Richard A Gibbs; Jeffrey Rogers; David H O'Connor
Journal:  Immunogenetics       Date:  2017-03-25       Impact factor: 2.846

4.  Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques.

Authors:  Anna J Moreland; Lisbeth A Guethlein; R Keith Reeves; Karl W Broman; R Paul Johnson; Peter Parham; David H O'Connor; Benjamin N Bimber
Journal:  BMC Genomics       Date:  2011-06-07       Impact factor: 3.969

Review 5.  The genomic context of natural killer receptor extended gene families.

Authors:  J Trowsdale; R Barten; A Haude; C A Stewart; S Beck; M J Wilson
Journal:  Immunol Rev       Date:  2001-06       Impact factor: 12.988

6.  Characterization of rhesus macaque KIR genotypes and haplotypes.

Authors:  Philip H Kruse; Cornelia Rosner; Lutz Walter
Journal:  Immunogenetics       Date:  2010-03-02       Impact factor: 2.846

7.  Killer-cell immunoglobulin-like receptor (KIR) nomenclature report, 2002.

Authors:  Steven G E Marsh; Peter Parham; Bo Dupont; Daniel E Geraghty; John Trowsdale; Derek Middleton; Carlos Vilches; Mary Carrington; Campbell Witt; Lisbeth A Guethlein; Heather Shilling; Christian A Garcia; Katharine C Hsu; Hester Wain
Journal:  Immunogenetics       Date:  2003-06-28       Impact factor: 2.846

Review 8.  The killer-cell immunoglobulin-like receptors of macaques.

Authors:  Benjamin N Bimber; David T Evans
Journal:  Immunol Rev       Date:  2015-09       Impact factor: 12.988

9.  NK cell receptors of the orangutan (Pongo pygmaeus): a pivotal species for tracking the coevolution of killer cell Ig-like receptors with MHC-C.

Authors:  Lisbeth A Guethlein; Laura R Flodin; Erin J Adams; Peter Parham
Journal:  J Immunol       Date:  2002-07-01       Impact factor: 5.422

10.  A vision of KIR variation at super resolution.

Authors:  John A Hammond; Mary Carrington; Salim I Khakoo
Journal:  Immunology       Date:  2016-04-05       Impact factor: 7.397
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  7 in total

1.  Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics.

Authors:  Can Kesmir; Ronald Bontrop
Journal:  Immunogenetics       Date:  2020-02       Impact factor: 2.846

2.  Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.

Authors:  Wesley C Warren; R Alan Harris; Marina Haukness; Ian T Fiddes; Shwetha C Murali; Jason Fernandes; Philip C Dishuck; Jessica M Storer; Muthuswamy Raveendran; LaDeana W Hillier; David Porubsky; Yafei Mao; David Gordon; Mitchell R Vollger; Alexandra P Lewis; Katherine M Munson; Elizabeth DeVogelaere; Joel Armstrong; Mark Diekhans; Jerilyn A Walker; Chad Tomlinson; Tina A Graves-Lindsay; Milinn Kremitzki; Sofie R Salama; Peter A Audano; Merly Escalona; Nicholas W Maurer; Francesca Antonacci; Ludovica Mercuri; Flavia A M Maggiolini; Claudia Rita Catacchio; Jason G Underwood; David H O'Connor; Ashley D Sanders; Jan O Korbel; Betsy Ferguson; H Michael Kubisch; Louis Picker; Ned H Kalin; Douglas Rosene; Jon Levine; David H Abbott; Stanton B Gray; Mar M Sanchez; Zsofia A Kovacs-Balint; Joseph W Kemnitz; Sara M Thomasy; Jeffrey A Roberts; Erin L Kinnally; John P Capitanio; J H Pate Skene; Michael Platt; Shelley A Cole; Richard E Green; Mario Ventura; Roger W Wiseman; Benedict Paten; Mark A Batzer; Jeffrey Rogers; Evan E Eichler
Journal:  Science       Date:  2020-12-18       Impact factor: 47.728

3.  Rhesus Macaque Activating Killer Immunoglobulin-Like Receptors Associate With Fc Receptor Gamma (FCER1G) and Not With DAP12 Adaptor Proteins Resulting in Stabilized Expression and Enabling Signal Transduction.

Authors:  Mohammad Zahidul Hasan; Lutz Walter
Journal:  Front Immunol       Date:  2021-04-23       Impact factor: 7.561

4.  Rapid Characterization of Complex Killer Cell Immunoglobulin-Like Receptor (KIR) Regions Using Cas9 Enrichment and Nanopore Sequencing.

Authors:  Jesse Bruijnesteijn; Marit van der Wiel; Natasja G de Groot; Ronald E Bontrop
Journal:  Front Immunol       Date:  2021-09-14       Impact factor: 7.561

Review 5.  The Genomic Organization of the LILR Region Remained Largely Conserved Throughout Primate Evolution: Implications for Health And Disease.

Authors:  Lisanne Storm; Jesse Bruijnesteijn; Natasja G de Groot; Ronald E Bontrop
Journal:  Front Immunol       Date:  2021-10-19       Impact factor: 7.561

6.  KIR3DL05 and KIR3DS02 Recognition of a Nonclassical MHC Class I Molecule in the Rhesus Macaque Implicated in Pregnancy Success.

Authors:  Rachel E Nicholas; Kjell Sandstrom; Jennifer L Anderson; Willow R Smith; Molly Wetzel; Priyankana Banerjee; Sanath Kumar Janaka; David T Evans
Journal:  Front Immunol       Date:  2022-03-23       Impact factor: 8.786

Review 7.  The Genetic Mechanisms Driving Diversification of the KIR Gene Cluster in Primates.

Authors:  Jesse Bruijnesteijn; Natasja G de Groot; Ronald E Bontrop
Journal:  Front Immunol       Date:  2020-09-11       Impact factor: 7.561
  7 in total

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