Literature DB >> 21645414

Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques.

Anna J Moreland1, Lisbeth A Guethlein, R Keith Reeves, Karl W Broman, R Paul Johnson, Peter Parham, David H O'Connor, Benjamin N Bimber.   

Abstract

BACKGROUND: Human killer immunoglobulin-like receptors (KIRs) play a critical role in governing the immune response to neoplastic and infectious disease. Rhesus macaques serve as important animal models for many human diseases in which KIRs are implicated; however, the study of KIR activity in this model is hindered by incomplete characterization of KIR genetics.
RESULTS: Here we present a characterization of KIR genetics in rhesus macaques (Macaca mulatta). We conducted a survey of KIRs in this species, identifying 47 novel full-length KIR sequences. Using this expanded sequence library to build upon previous work, we present evidence supporting the existence of 22 Mamu-KIR genes, providing a framework within which to describe macaque KIRs. We also developed a novel pyrosequencing-based technique for KIR genotyping. This method provides both comprehensive KIR genotype and frequency estimates of transcript level, with implications for the study of KIRs in all species.
CONCLUSIONS: The results of this study significantly improve our understanding of macaque KIR genetic organization and diversity, with implications for the study of many human diseases that use macaques as a model. The ability to obtain comprehensive KIR genotypes is of basic importance for the study of KIRs, and can easily be adapted to other species. Together these findings both advance the field of macaque KIRs and facilitate future research into the role of KIRs in human disease.

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Year:  2011        PMID: 21645414      PMCID: PMC3125267          DOI: 10.1186/1471-2164-12-295

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  47 in total

1.  IPD: the Immuno Polymorphism Database.

Authors:  James Robinson; Steven G E Marsh
Journal:  Methods Mol Biol       Date:  2007

2.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

3.  Impact of cytomegalovirus (CMV) reactivation after umbilical cord blood transplantation.

Authors:  Jill C Beck; John E Wagner; Todd E DeFor; Claudio G Brunstein; Mark R Schleiss; Jo-Anne Young; Daniel H Weisdorf; Sarah Cooley; Jeffrey S Miller; Michael R Verneris
Journal:  Biol Blood Marrow Transplant       Date:  2009-09-26       Impact factor: 5.742

4.  Activating killer cell immunoglobulin-like receptors 3DS1 and 2DS1 protect against developing the severe form of recurrent respiratory papillomatosis.

Authors:  Vincent R Bonagura; Zeying Du; Elham Ashouri; Lihui Luo; Lynda J Hatam; James A DeVoti; David W Rosenthal; Bettie M Steinberg; Allan L Abramson; David W Gjertson; Elaine F Reed; Raja Rajalingam
Journal:  Hum Immunol       Date:  2009-10-25       Impact factor: 2.850

5.  Dimorphic motifs in D0 and D1+D2 domains of killer cell Ig-like receptor 3DL1 combine to form receptors with high, moderate, and no avidity for the complex of a peptide derived from HIV and HLA-A*2402.

Authors:  Deepti Sharma; Karine Bastard; Lisbeth A Guethlein; Paul J Norman; Nobuyo Yawata; Makoto Yawata; Marcelo Pando; Hathairat Thananchai; Tao Dong; Sarah Rowland-Jones; Frances M Brodsky; Peter Parham
Journal:  J Immunol       Date:  2009-09-14       Impact factor: 5.422

6.  Major histocompatibility complex genotyping with massively parallel pyrosequencing.

Authors:  Roger W Wiseman; Julie A Karl; Benjamin N Bimber; Claire E O'Leary; Simon M Lank; Jennifer J Tuscher; Ann M Detmer; Pascal Bouffard; Natalya Levenkova; Cynthia L Turcotte; Edward Szekeres; Chris Wright; Timothy Harkins; David H O'Connor
Journal:  Nat Med       Date:  2009-10-11       Impact factor: 53.440

7.  Complete characterization of killer Ig-like receptor (KIR) haplotypes in Mauritian cynomolgus macaques: novel insights into nonhuman primate KIR gene content and organization.

Authors:  Benjamin N Bimber; Anna J Moreland; Roger W Wiseman; Austin L Hughes; David H O'Connor
Journal:  J Immunol       Date:  2008-11-01       Impact factor: 5.422

8.  A splice site mutation converts an inhibitory killer cell Ig-like receptor into an activating one.

Authors:  Jeroen H Blokhuis; Gaby G M Doxiadis; Ronald E Bontrop
Journal:  Mol Immunol       Date:  2008-11-18       Impact factor: 4.407

9.  Evidence for balancing selection acting on KIR2DL4 genotypes in rhesus macaques of Indian origin.

Authors:  Jeroen H Blokhuis; Marit K van der Wiel; Gaby G M Doxiadis; Ronald E Bontrop
Journal:  Immunogenetics       Date:  2009-06-09       Impact factor: 2.846

10.  IPD--the Immuno Polymorphism Database.

Authors:  James Robinson; Kavita Mistry; Hamish McWilliam; Rodrigo Lopez; Steven G E Marsh
Journal:  Nucleic Acids Res       Date:  2009-10-29       Impact factor: 16.971

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  30 in total

Review 1.  Comparative genomics of the human, macaque and mouse major histocompatibility complex.

Authors:  Takashi Shiina; Antoine Blancher; Hidetoshi Inoko; Jerzy K Kulski
Journal:  Immunology       Date:  2016-07-10       Impact factor: 7.397

Review 2.  Haplessly hoping: macaque major histocompatibility complex made easy.

Authors:  Roger W Wiseman; Julie A Karl; Patrick S Bohn; Francesca A Nimityongskul; Gabriel J Starrett; David H O'Connor
Journal:  ILAR J       Date:  2013

3.  Diversification of Bw4 Specificity and Recognition of a Nonclassical MHC Class I Molecule Implicated in Maternal-Fetal Tolerance by Killer Cell Ig-like Receptors of the Rhesus Macaque.

Authors:  Priyankana Banerjee; Moritz Ries; Sanath Kumar Janaka; Andres G Grandea; Roger Wiseman; David H O'Connor; Thaddeus G Golos; David T Evans
Journal:  J Immunol       Date:  2018-09-19       Impact factor: 5.422

4.  KIR3DL01 recognition of Bw4 ligands in the rhesus macaque: maintenance of Bw4 specificity since the divergence of apes and Old World monkeys.

Authors:  Jamie L Schafer; Arnaud D Colantonio; William J Neidermyer; Dawn M Dudley; Michelle Connole; David H O'Connor; David T Evans
Journal:  J Immunol       Date:  2014-01-22       Impact factor: 5.422

5.  Improved full-length killer cell immunoglobulin-like receptor transcript discovery in Mauritian cynomolgus macaques.

Authors:  Trent M Prall; Michael E Graham; Julie A Karl; Roger W Wiseman; Adam J Ericsen; Muthuswamy Raveendran; R Alan Harris; Donna M Muzny; Richard A Gibbs; Jeffrey Rogers; David H O'Connor
Journal:  Immunogenetics       Date:  2017-03-25       Impact factor: 2.846

6.  OMIP-035: Functional analysis of natural killer cell subsets in macaques.

Authors:  Kim L Weisgrau; Moritz Ries; Nicholas Pomplun; David T Evans; Eva G Rakasz
Journal:  Cytometry A       Date:  2016-08-17       Impact factor: 4.355

Review 7.  Diversification of both KIR and NKG2 natural killer cell receptor genes in macaques - implications for highly complex MHC-dependent regulation of natural killer cells.

Authors:  Lutz Walter; Beatrix Petersen
Journal:  Immunology       Date:  2016-10-05       Impact factor: 7.397

Review 8.  The killer-cell immunoglobulin-like receptors of macaques.

Authors:  Benjamin N Bimber; David T Evans
Journal:  Immunol Rev       Date:  2015-09       Impact factor: 12.988

Review 9.  Co-evolution of MHC class I and variable NK cell receptors in placental mammals.

Authors:  Lisbeth A Guethlein; Paul J Norman; Hugo G Hilton; Peter Parham
Journal:  Immunol Rev       Date:  2015-09       Impact factor: 12.988

Review 10.  Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates.

Authors:  Jesse Bruijnesteijn; Natasja G de Groot; Nel Otting; Giuseppe Maccari; Lisbeth A Guethlein; James Robinson; Steven G E Marsh; Lutz Walter; David H O'Connor; John A Hammond; Peter Parham; Ronald E Bontrop
Journal:  Immunogenetics       Date:  2019-11-29       Impact factor: 2.846

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