| Literature DB >> 31779135 |
Emmanuel W Bumunang1,2,3, Tim A McAllister2, Kim Stanford3, Hany Anany4, Yan D Niu5, Collins N Ateba1.
Abstract
Non-O157 Shiga toxin-producing Escherichia coli (STEC) E. coli are emerging pathotypes that are frequently associated with diseases in humans around the world. The consequences of these serogroups for public health is a concern given the lack of effective prevention and treatment measures. In this study, ten bacteriophages (phages; SA20RB, SA79RD, SA126VB, SA30RD, SA32RD, SA35RD, SA21RB, SA80RD, SA12KD and SA91KD) isolated from cattle faeces collected in the North-West of South Africa were characterized. Activity of these phages against non-O157 STEC isolates served as hosts for these phages. All of the phages except SA80RD displayed lytic against non-O157 E. coli isolates. Of 22 non-O157 E. coli isolates, 14 were sensitive to 9 of the 10 phages tested. Phage SA35RD was able to lyse 13 isolates representing a diverse group of non-O157 E. coli serotypes including a novel O-antigen Shiga toxigenic (wzx-Onovel5:H19) strain. However, non-O157 E. coli serotypes O76:H34, O99:H9, O129:H23 and O136:H30 were insensitive to all phages. Based on transmission electron microscopy, the non-O157 STEC phages were placed into Myoviridae (n = 5) and Siphoviridae (n = 5). Genome of the phage ranged from 44 to 184.3 kb. All but three phages (SA91KD, SA80RD and SA126VB) were insensitive to EcoRI-HF and HindIII nucleases. This is the first study illustrating that cattle from North-West South Africa harbour phages with lytic potentials that could potentially be exploited for biocontrol against a diverse group of non-O157 STEC isolated from the same region.Entities:
Keywords: Shiga toxin-producing Escherichia coli; biocontrol; non-O157 E. coli
Year: 2019 PMID: 31779135 PMCID: PMC6956337 DOI: 10.3390/microorganisms7120615
Source DB: PubMed Journal: Microorganisms ISSN: 2076-2607
Taxonomy and dimensions of 10 non-O157 E. coli phages.
| Sampling Area | Phage ID | Family | Subfamily | Head Dimension (nm) | Tail Dimension (nm) | ||
|---|---|---|---|---|---|---|---|
| Width | Height | Width | Height | ||||
| Rooigrond dairy | SA79RD |
| - | 100 ± 0 | 133 ± 0 | 24 ± 2 | 133 ± 0 |
| Koster dairy | SA91KD |
| - | 70 ± 3 | 73 ± 4 | 23 ± 0 | 154 ± 4 |
| Rooigrond beef | SA20RB |
| - | 100 ± 0 | 129 ± 4 | 25 ± 2 | 134 ± 2 |
| Rooigrond beef | SA21RB |
| - | 82 ± 2 | 129 ± 4 | 25 ± 4 | 132 ± 2 |
| Rooigrond dairy | SA35RD |
| - | 95 ± 7 | 133 ± 2 | 24 ± 2 | 133 ± 2 |
| Rooigrond dairy | SA80RD |
| - | 50 ± 6 | 67 ± 0 | 9 ± 2 | 200 ± 0 |
| Koster dairy | SA12KD |
| “ | 70 ± 0 | 78 ± 2 | 13 ± 2 | 197 ± 0 |
| Vryburg beef | SA126VB |
| “ | 67 ± 7 | 81 ± 4 | 12 ± 2 | 191 ± 2 |
| Rooigrond dairy | SA30RD |
| “ | 67 ± 0 | 67 ± 0 | 10 ± 0 | 200 ± 3 |
| Rooigrond dairy | SA32RD |
| “ | 67 ± 0 | 69 ± 2 | 10 ± 0 | 174 ± 2 |
Figure 1Transmission electron microscopy of 10 non-O157-infecting phages negatively stained with 2% uranyl acetate. (A) T1-like phage (SA12KD); (B) T4-like phage (SA79RD); (C) T1-like phage (SA80RD); (D) no genus assigned (SA91KD); (E) T1-like phage (SA126VB); (F) T4-like phage (SA20RB); (G) T4-like phage (SA21RB); (H) T1-like phage (SA30RD); (I) T4-like phage (SA35RD) and (J) T1-like phage (SA32RD). Bar represents 20 nm.
Lytic ability of 10 non-O57 E. coli phages.
| Serogroup | Bacteriophage | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SA20RB | SA79RD | SA126VB | SA30RD | SA32RD | SA35RD | SA21RB | SA80RD | SA12KD | SA91KD | |
| O156:H25 | + | + | - | - | - | + | + | - | - | + |
| O108:H2 | + | + | + | - | - | + | + | - | - | + |
| O136:H30 | - | - | - | - | - | - | - | - | - | - |
| O99:H9 | - | - | - | - | - | - | - | - | - | - |
| wzx-Onovel24:H20 | + | + | - | - | - | + | + | - | - | - |
| O140:H21 | + | - | - | - | - | + | + | - | - | - |
| O102:H4 | - | - | + | - | - | - | - | - | - | - |
| O129:H23 | - | - | - | - | - | - | - | - | - | - |
| O17:H18 | - | + | - | - | + | + | - | + | - | - |
| O76:H34 | - | - | - | - | - | - | - | - | - | - |
| O26:H11 | - | + | - | - | - | + | - | - | - | - |
| O129:H23 | - | - | - | - | - | - | - | - | - | - |
| O154:H10 | + | - | - | - | - | - | + | - | - | - |
| O116:H21 | - | + | - | - | - | + | + | - | - | - |
| wzx-Onovel5:H19 | + | + | + | + | - | + | + | - | - | + |
| O87:H7 | + | + | - | - | - | + | + | - | - | - |
| O129:H21 | - | + | - | - | - | + | + | - | - | - |
| O26:H11 | - | + | - | - | - | + | - | - | - | - |
| O26:H11 | - | - | - | - | - | - | + | - | - | - |
| O163:H19 | + | + | + | + | - | + | - | - | - | + |
| O40:H19 | + | + | - | - | - | + | - | - | - | - |
| O22:H21 | + | - | - | - | - | - | - | - | - | - |
+ = lytic activity; - = no lytic activity.
Figure 2Overlay agar plates of the Myoviridae (SA20RB (F) and SA21RB (G)) and Siphoviridae (SA30RD (H) and SA32RD (J)) phage. Indicating halos around lysis zone illustrating depolymerase activity. Bar represents 20 nm.
Figure 3Pulsed-field gel electrophoresis analysis of phages indicating approximate whole genome sizes with lanes in duplicates, run with a Salmonella Braenderup reference standard (H9812) marker (M).
Figure 4Restriction analysis of phages using EcoRI-HF and HindIII and a low range marker (M) 1 kb plus.