| Literature DB >> 31773308 |
Antje Kerkow1,2,3, Ralf Wieland4, Linus Früh4, Franz Hölker5,6, Jonathan M Jeschke5,6,7, Doreen Werner4, Helge Kampen8.
Abstract
Invasive mosquito species and the pathogens they transmit represent a serious health risk to both humans and animals. Thus, predictions on their potential geographic distribution are urgently needed. In the case of a recently invaded region, only a small number of occurrence data is typically available for analysis, and absence data are not reliable. To overcome this problem, we have tested whether it is possible to determine the climatic ecological niche of an invasive mosquito species by using both the occurrence data of other, native species and machine learning. The approach is based on a support vector machine and in this scenario applied to the Asian bush mosquito (Aedes japonicus japonicus) in Germany. Presence data for this species (recorded in the Germany since 2008) as well as for three native mosquito species were used to model the potential distribution of the invasive species. We trained the model with data collected from 2011 to 2014 and compared our predicted occurrence probabilities for 2015 with observations found in the field throughout 2015 to evaluate our approach. The prediction map showed a high degree of concordance with the field data. We applied the model to medium climate conditions at an early stage of the invasion (2011-2015), and developed an explanation for declining population densities in an area in northern Germany. In addition to the already known distribution areas, our model also indicates a possible spread to Saarland, southwestern Rhineland-Palatinate and in 2015 to southern Bavaria, where the species is now being increasingly detected. However, there is also evidence that the possible distribution area under the mean climate conditions was underestimated.Entities:
Keywords: Citizen science; Invasive species distribution models; Machine learning; Occurrence probability; Support vector machine
Mesh:
Year: 2019 PMID: 31773308 PMCID: PMC6942025 DOI: 10.1007/s00436-019-06513-5
Source DB: PubMed Journal: Parasitol Res ISSN: 0932-0113 Impact factor: 2.289
Fig. 1Visualisation of species sampling data of the years 2011–2014 (training years for the model). The evidence points appear in high colour intensity when several of the same colour overlay each other. This image was created with QGIS 3.8.2
Fig. 2Workflow: Model training and validation. This image was created with Inkscape 0.92
Fig. 3Weather conditions at the mosquito collection sites in the corresponding year of monitoring (between 2011 and 2015) classified by the training group. Aedes vexans, Aedes geniculatus and Anopheles daciae are grouped under the term “Native”. T09 = mean temperature in September, T10 = mean temperature in October, T12 = mean temperature in December, T13 = mean temperature in spring (average of March, April and May), P02 = sum of precipitation in February, P04 = sum of precipitation in April, P06 = sum of precipitation in June, D15 = drought index of autumn (average of September, October and November). This image was created under Python 3.7
Confusion matrix for the trained model and validation data from 2015
| Predicted class | Sum | |||
|---|---|---|---|---|
| Native species | ||||
| Observed class | 241 ( | 67 ( | 308 | |
| Native species | 24 ( | 91 ( | 115 | |
| Sum | 265 | 158 | 423 | |
TP true positive, TN true negative, FN false negative, FP false positive (first place and bold referring to Ae. j. japonicus, in second place referring to the class of native species)
Validation of the model training with test data from 2015
| Class | Precision | Recall | |
|---|---|---|---|
| 0.91 | 0.78 | 0.84 | |
| Native species | 0.58 | 0.79 | 0.67 |
| Total | 0.82 | 0.78 | 0.79 |
Fig. 4Left: predicted occurrence areas of Ae. j. japonicus for the year 2015 as opposed to field samplings in 2015. Species data from 2015 were not included in the model training. Right: Average colonisation potential in the period 01/2011–12/2015 (labelled federal states: LS, Lower Saxony; NRW, North Rhine-Westphalia; HE, Hesse; RP, Rhineland-Palatinate; SL, Saarland; BW, Baden-Wuerttemberg; BAV, Bavaria). This image was created with QGIS 3.8.2
Fig. 5Predicted occurrence probabilities of Ae. j. japonicus in Germany, related to weather conditions of 2015, compared with field collections in 2015. This image was created with Python 2.7