Literature DB >> 31769979

Steric Enforcement of cis-Epoxide Formation in the Radical C-O-Coupling Reaction by Which (S)-2-Hydroxypropylphosphonate Epoxidase (HppE) Produces Fosfomycin.

Shengbin Zhou1, Juan Pan1, Katherine M Davis1, Irene Schaperdoth1, Bo Wang1, Amie K Boal1, Carsten Krebs1, J Martin Bollinger1.   

Abstract

(S)-2-Hydroxypropylphosphonate [(S)-2-HPP, 1] epoxidase (HppE) reduces H2O2 at its nonheme-iron cofactor to install the oxirane "warhead" of the antibiotic fosfomycin. The net replacement of the C1 pro-R hydrogen of 1 by its C2 oxygen, with inversion of configuration at C1, yields the cis-epoxide of the drug [(1R,2S)-epoxypropylphosphonic acid (cis-Fos, 2)]. Here we show that HppE achieves ∼95% selectivity for C1 inversion and cis-epoxide formation via steric guidance of a radical-coupling mechanism. Published structures of the HppE·FeII·1 and HppE·ZnII·2 complexes reveal distinct pockets for C3 of the substrate and product and identify four hydrophobic residues-Leu120, Leu144, Phe182, and Leu193-close to C3 in one of the complexes. Replacement of Leu193 in the substrate C3 pocket with the bulkier Phe enhances stereoselectivity (cis:trans ∼99:1), whereas the Leu120Phe substitution in the product C3 pocket diminishes it (∼82:18). Retention of C1 configuration and trans-epoxide formation become predominant with the bulk-reducing Phe182Ala substitution in the substrate C3 pocket (∼13:87), trifluorination of C3 (∼23:77), or both (∼1:99). The effect of C3 trifluorination is counteracted by the more constrained substrate C3 pockets in the Leu193Phe (∼56:44) and Leu144Phe/Leu193Phe (∼90:10) variants. The ability of HppE to epoxidize substrate analogues bearing halogens at C3, C1, or both is inconsistent with a published hypothesis of polar cyclization via a C1 carbocation. Rather, specific enzyme-substrate contacts drive inversion of the C1 radical-as proposed in a recent computational study-to direct formation of the more potently antibacterial cis-epoxide by radicaloid C-O coupling.

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Year:  2019        PMID: 31769979      PMCID: PMC6933072          DOI: 10.1021/jacs.9b10974

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

1.  Protein purification and function assignment of the epoxidase catalyzing the formation of fosfomycin.

Authors:  P Liu; K Murakami; T Seki; X He; S M Yeung; T Kuzuyama; H Seto; H Liu
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

2.  Molecular cloning of hyoscyamine 6 beta-hydroxylase, a 2-oxoglutarate-dependent dioxygenase, from cultured roots of Hyoscyamus niger.

Authors:  J Matsuda; S Okabe; T Hashimoto; Y Yamada
Journal:  J Biol Chem       Date:  1991-05-25       Impact factor: 5.157

3.  Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism.

Authors:  Karen McLuskey; Scott Cameron; Friedrich Hammerschmidt; William N Hunter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

Review 4.  Enzymatic chemistry of cyclopropane, epoxide, and aziridine biosynthesis.

Authors:  Christopher J Thibodeaux; Wei-chen Chang; Hung-wen Liu
Journal:  Chem Rev       Date:  2011-10-21       Impact factor: 60.622

5.  Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation.

Authors:  P L Roach; I J Clifton; C M Hensgens; N Shibata; C J Schofield; J Hajdu; J E Baldwin
Journal:  Nature       Date:  1997-06-19       Impact factor: 49.962

6.  How do Enzymes Utilize Reactive OH Radicals? Lessons from Nonheme HppE and Fenton Systems.

Authors:  Binju Wang; Jiarui Lu; Kshatresh Dutta Dubey; Geng Dong; Wenzhen Lai; Sason Shaik
Journal:  J Am Chem Soc       Date:  2016-07-01       Impact factor: 15.419

7.  Characterization of a Cys115 to Asp substitution in the Escherichia coli cell wall biosynthetic enzyme UDP-GlcNAc enolpyruvyl transferase (MurA) that confers resistance to inactivation by the antibiotic fosfomycin.

Authors:  D H Kim; W J Lees; K E Kempsell; W S Lane; K Duncan; C T Walsh
Journal:  Biochemistry       Date:  1996-04-16       Impact factor: 3.162

8.  Reaction of HppE with substrate analogues: evidence for carbon-phosphorus bond cleavage by a carbocation rearrangement.

Authors:  Wei-chen Chang; Steven O Mansoorabadi; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2013-05-23       Impact factor: 15.419

9.  Kinetics, stoichiometry, and identification of the reactive thiolate in the inactivation of UDP-GlcNAc enolpyruvoyl transferase by the antibiotic fosfomycin.

Authors:  J L Marquardt; E D Brown; W S Lane; T M Haley; Y Ichikawa; C H Wong; C T Walsh
Journal:  Biochemistry       Date:  1994-09-06       Impact factor: 3.162

10.  Mechanistic studies of an unprecedented enzyme-catalysed 1,2-phosphono-migration reaction.

Authors:  Wei-chen Chang; Mishtu Dey; Pinghua Liu; Steven O Mansoorabadi; Sung-Ju Moon; Zongbao K Zhao; Catherine L Drennan; Hung-wen Liu
Journal:  Nature       Date:  2013-04-04       Impact factor: 49.962

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