Literature DB >> 31767998

Chromosome organization in bacteria: mechanistic insights into genome structure and function.

Remus T Dame1,2, Fatema-Zahra M Rashid3,4, David C Grainger5.   

Abstract

Bacterial chromosomes are folded to compact DNA and facilitate cellular processes. Studying model bacteria has revealed aspects of chromosome folding that are applicable to many species. Primarily controlled by nucleoid-associated proteins, chromosome folding is hierarchical, from large-scale macrodomains to smaller-scale structures that influence DNA transactions, including replication and transcription. Here we review the environmentally regulated, architectural and regulatory roles of nucleoid-associated proteins and the implications for bacterial cell biology. We also highlight similarities and differences in the chromosome folding mechanisms of bacteria and eukaryotes.

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Year:  2019        PMID: 31767998     DOI: 10.1038/s41576-019-0185-4

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  49 in total

Review 1.  Compaction and control-the role of chromosome-organizing proteins in Streptomyces.

Authors:  Marcin J Szafran; Dagmara Jakimowicz; Marie A Elliot
Journal:  FEMS Microbiol Rev       Date:  2020-11-24       Impact factor: 16.408

2.  Unique Features of Tandem Repeats in Bacteria.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

3.  TmcA functions as a lysine 2-hydroxyisobutyryltransferase to regulate transcription.

Authors:  Hanyang Dong; Yujie Zhao; Changfen Bi; Yue Han; Jianji Zhang; Xue Bai; Guijin Zhai; Hui Zhang; Shanshan Tian; Deqing Hu; Liyan Xu; Kai Zhang
Journal:  Nat Chem Biol       Date:  2021-12-13       Impact factor: 15.040

4.  Steric interactions and out-of-equilibrium processes control the internal organization of bacteria.

Authors:  A Movilla Miangolarra; Sophia Hsin-Jung Li; Jean-François Joanny; Ned S Wingreen; Michele Castellana
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-26       Impact factor: 11.205

5.  Single-cell Hi-C data analysis: safety in numbers.

Authors:  Aleksandra A Galitsyna; Mikhail S Gelfand
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 11.622

Review 6.  Bacterial transcription during growth arrest.

Authors:  Megan Bergkessel
Journal:  Transcription       Date:  2021-09-06

7.  HU Knew? Bacillus subtilis HBsu Is Required for DNA Replication Initiation.

Authors:  Frederic D Schramm; Heath Murray
Journal:  J Bacteriol       Date:  2022-07-11       Impact factor: 3.476

8.  Novel anti-repression mechanism of H-NS proteins by a phage protein.

Authors:  Fredj Ben Bdira; Amanda M Erkelens; Liang Qin; Alexander N Volkov; Andrew M Lippa; Nicholas Bowring; Aimee L Boyle; Marcellus Ubbink; Simon L Dove; Remus T Dame
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

Review 9.  Multi-Scale Organization of the Drosophila melanogaster Genome.

Authors:  Samantha C Peterson; Kaylah B Samuelson; Stacey L Hanlon
Journal:  Genes (Basel)       Date:  2021-05-27       Impact factor: 4.096

10.  Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps.

Authors:  Benjamin R Gilbert; Zane R Thornburg; Vinson Lam; Fatema-Zahra M Rashid; John I Glass; Elizabeth Villa; Remus T Dame; Zaida Luthey-Schulten
Journal:  Front Mol Biosci       Date:  2021-07-22
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