| Literature DB >> 31766540 |
Iwona Budziak1, Marta Arczewska2, Daniel M Kamiński3.
Abstract
Four novel xanthohumol (Entities:
Keywords: Raman spectroscopy; XRD, FTIR; crystal engineering; prenylated chalcones; principal component analysis (PCA); xanthohumol
Mesh:
Substances:
Year: 2019 PMID: 31766540 PMCID: PMC6930654 DOI: 10.3390/molecules24234245
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1(a) Scheme of xanthohumol (XN) structure; (b) atom numbering in the XN cocrystals. For more than one XN molecule in the asymmetric part of a unit cell, the suffixes A, B, C, and D were added, see crystallographic information files (CIFs) in the Supplementary Materials.
Scheme 1Chemical structure of coformers employed in this study.
Figure 2Micrographs of cocrystals obtained with a Nikon Eclipse 50iPOL microscope with the charge-coupled device (CCD) camera. (a) XN, (b) XN−NIC, (c) XN−GA, (d) XN−AC, and (e) XN−CF.
Crystallographic parameters and refinement details for the target cocrystals.
| XN−NIC (1:1) | XN−GA (1:1) | XN−AC (1:1) | XN−CF (1:1) | |
|---|---|---|---|---|
| Molecular formula | C24 H24 N O5.5 | C15.7 H17 N0.3 O4 | C44 H49 N O11 | C14.5 H18 N2 O4.5 |
| Temperature (K) | 293(2) | 293(2) | 293(2) | 293(2) |
| Crystal system | monoclinic | triclinic | triclinic | triclinic |
| Space group |
| |||
| 19.754(2) | 10.2247(2) | 8.5254(3) | 6.979(2) | |
| 14.8652(8) | 14.3115(2) | 15.2889(4) | 13.470(3) | |
| 7.9105(7) | 16.0277(2) | 16.7199(9) | 16.775(2) | |
| 90 | 73.358(2) | 105.91(2) | 78.13(2) | |
| 100.365(7) | 77.099(2) | 104.078(1) | 86.33(2) | |
| 90 | 75.304(2) | 93.564(1) | 77.82(2) | |
| 2284.9(3) | 2144.71(7) | 2013.4(2) | 1508.1(5) | |
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| 4 | 6 | 2 | 4 |
| Calculated density (g cm−3) | 1.2047 | 1.2726 | 1.267 | 1.287 |
| Absorption coefficient (mm−1) | 0.703 | 0.753 | 0.745 | 0.803 |
| 879 | 875 | 816 | 622 | |
| θ range for data collection (°) | 3.74–68.87 | 3.83–68.65 | 3.49–83.19 | 3.92–66.53 |
| Index ranges | −23 ≤ h ≤ 23 | −12 ≤ h ≤ 12 | −10≤ h ≤ 10 | −8 ≤ h ≤ 5 |
| Reflections collected/unique | 17962/4158 | 39207/12487 | 32035/7314 | 9599/5911 |
| Observed/restraints/parameters | 17504/0/341 | 12487/3/1320 | 7314/0/658 | 5887/0/359 |
| Goodness-of-fit on | 0.993 | 1.007 | 1.090 | 1.2648 |
| Final R indices (I>2sigma(I)) | R1 = 0.0637 | R1 = 0.0391 | R1 = 0.0497 | R1 = 0.2690 |
| R indices (all data) | R1 = 0.0985 | R1 = 0.0514 | R1 = 0.0546 | R1 = 0.4224 |
| Largest diff. peak and hole (e Å−3) | 0.256/−0.231 | 0.157/−0.142 | 0.27/−0.26 | 0.89/−0.60 |
| CCDC Number | 1955269 | 1955276 | 1955279 | 1955267 |
Figure 3Side and top views of the XN molecules in (a) XN−NIC, (b) XN−GA, (c) XN−AC, and (d) XN−CF.
Figure 4A layered section of the XN structure to show the homomolecular motif of infinite chains C(8) observed in the layers of XN molecules for the XN−NIC, XN−GA, and XN−AC crystals.
Figure 5Supramolecular motifs observed in (a) XN−NIC, (b) XN−GA, (c) XN−AC, and (d) XN−CF. The hydroxyl group O1−H1 from the B ring is hydrogen bonded with coformers in all studied structures.
Figure 6Crystal packing and interactions in the XN−NIC cocrystal showing (a) a layered section of XN structure and nicotinamide columns crossing them and (b) an infinite hydrogen bond chain C(6) in the XN−NIC cocrystal.
Figure 7(a) Altered layers of AD, BC (yellow A, magenta D, red B and violet C) of XN molecules in XN−GA; (b) hydrogen bonds in a supramolecular ring structure, the graph set notation . No symmetrically equivalent XN molecules in the crystal structure are represented by different colors.
Figure 8(a) Layers composed of A (blue) XN and B (green) XN molecules bonded by acetamide (red); (b) XN layers linking the supramolecular rings.
Figure 9(a) Weakly bonded layers in the XN−CF cocrystals; (b) the in-plane of the XN layer hydrogen bonds. It can be seen that one XN molecule (green) is surrounded by three caffeine moieties (yellow).
Figure 10Solubility profiles of XN and its cocrystals (XN−CF, XN−NIC, XN−GA, and XN−AC) in a 50:50 (v/v) ethanol–water solution at 27 °C.
Figure 11FTIR spectra of (a) xanthohumol, and the investigated cocrystals: (b) XN−GA, (c) XN−AC, (d) XN−NIC, and (e) XN−CF.
Figure 12Raman spectra of (a) xanthohumol and the target cocrystals: (b) XN−GA, (c) XN−AC, (d) XN−NIC, and (e) XN−CF.
Eigenvalues, percentage of variance, and cumulative percentage in the data used for the PCA calculations obtained for the XN cocrystals and the physical mixtures (only for the FTIR data).
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| 1700–1000 cm−1 | 1 | 5.452366 | 61.78255 | 61.7826 |
| 2 | 2.476297 | 28.05973 | 89.8423 | |
| 3 | 0.656420 | 7.43811 | 97.2804 | |
| 4 | 0.240008 | 2.71961 | 100.0000 | |
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| 3700–2700 cm−1 | 1 | 1.354704 | 58.52862 | 58.5286 |
| 2 | 0.601572 | 25.99032 | 84.5189 | |
| 3 | 0.238949 | 10.32354 | 94.8425 | |
| 4 | 0.073795 | 3.18824 | 98.0307 | |
| 1800–1000 cm−1 | 1 | 3.506911 | 52.04774 | 52.0477 |
| 2 | 1.439899 | 21.37023 | 73.4180 | |
| 3 | 0.749832 | 11.12861 | 84.5466 | |
| 4 | 0.601722 | 8.93044 | 93.4770 | |
| 5 | 0.208369 | 3.09250 | 96.5695 | |
| 6 | 0.118206 | 1.75435 | 98.3239 |
Figure 13Principal component analysis (PCA) two-dimensional (2D) score plot (PC1 vs. PC2) calculated for the data acquired from the Raman spectra.
Figure 14PCA 2D score plots (PC1 vs. PC2). (a) The region of 3700–2700 cm−1, and (b) the region of 1800–1000 cm−1 (red symbols represent the physical mixtures, blue symbols represent the cocrystals, and black symbols represent XN).
Figure 15Hierarchical clustering analysis (HCA) tree diagrams for the data obtained from the (a,b) Raman, and (c,d) FTIR spectra in the regions of 3700–2700 cm−1 and (e,f) 1800–1000 cm−1.