| Literature DB >> 31766478 |
Alexandra Iulia Irimie-Aghiorghiesei1, Cecilia Pop-Bica2, Sebastian Pintea3, Cornelia Braicu2, Roxana Cojocneanu2, Alina-Andreea Zimța4, Diana Gulei4, Ondřej Slabý5,6, Ioana Berindan-Neagoe2,4,7.
Abstract
Head and neck squamous cell carcinoma (HNSCC) is a group of malignancies with serious impact on patient quality of life due to a reduced rate of response to chemotherapy or radiation therapy. MiR-21 has been identified as one of the most common proto-oncogenes. It is hypothesized that upregulated miR-21 could serve as a potential biomarker for human cancer diagnosis. Considering the target genes identified for miR-21 in HNSCC, this transcript is an important player in several cellular processes that control carcinogenesis. The abnormal expression of miR-21 in this group of pathologies has been assessed in several publications, but given the heterogeneity of the published results, a meta-analysis and proper bioinformatics analysis of expression databases are needed to correctly establish the prognostic potential of this molecule. The present meta-analysis comprises the published survival data on HNSCC patients, reported as HR and 95% CI, in association with the expression levels of miR-21. Our investigation revealed that miR-21 could be used successfully as a prognostic biomarker in HNSCC patients, confirming its oncogenic potential. Specifically, the upregulation of miR-21 in these patients predicts a worse outcome in terms of survival rate.Entities:
Keywords: bioinformatics analysis; head and neck cancer; miR-21; prognostic; survival
Year: 2019 PMID: 31766478 PMCID: PMC6947266 DOI: 10.3390/jcm8122041
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Figure 1PRISMA flowchart of identification and selection of studies. PRISMA: Preferred Reporting Items for Systematic Reviews and Meta-Analyses.
Baseline characteristics of the selected studies evaluating the prognostic value of miR-21 in HNSCC patients.
| Reference | Country | Anatomic Site ( |
| Smoking Status | HPV Status ( | Outcome | Effect Sizes |
|---|---|---|---|---|---|---|---|
| Arantes et al. 2017 [ | Brazil | Oropharynx (35) | 71 | yes: 57 | Positive (17) | OS | HR: 2.05 (1.05–4.02) |
| Ko et al. 2014 [ | Korea | Oral cavity (88) | 167 | yes: 109 | Positive (36) | RFS | HR: 1.659 (0.824–3.343) |
| CSS | HR: 2.972 (1.34–6.59) | ||||||
| Hedbäck et al. 2014 [ | Denmark | Oral cavity (86) | 86 | - | - | DFS | HR: 1.6 (1.1–2.5) |
| Avissar et al. 2009 [ | USA | Oral cavity (94) | 169 | yes: 120 | Positive (19) | 5-year survival | HR: 1.68 (1.04–2.77) |
| Childs et al. 2009 [ | USA | Oral cavity (31) | 104 | yes: 46 | Positive (37) | OS | HR: 1 |
| Yu et al. 2017 [ | Taiwan | Oral cavity (100) | 100 | - | - | DFS | HR: 1.87 (1.21–2.87) |
| Supic et al. 2018 [ | Serbia | Tongue (60) | 60 | yes: 42 | - | OS | HR: 2.002 (0.904–4.434) |
OS: overall survival; RFS: relapse-free survival; CSS: cancer-specific survival; DFS: disease-free survival; HNSCC: head and neck squamous cell carcinoma.
Figure 2Forest plot for all analyzed studies.
The analysis performed for categorical moderators.
| Moderator | Categories of the Moderator | No. of Studies | Hazard Ratio | Lower Limit | Upper Limit | QB | df |
|
|---|---|---|---|---|---|---|---|---|
| Sample | FFPE tissue | 3 | 1.771 | 1.313 | 2.391 | 0.071 | 1 | 0.789 |
| Tissue | 4 | 1.675 | 1.267 | 2.215 | ||||
| Technique | ISH | 3 | 1.767 | 1.356 | 2.303 | 0.103 | 1 | 0.749 |
| Microarray/qRT-PCR | 4 | 1.651 | 1.197 | 2.277 |
FFPE: formalin-fixed paraffin embedded; QB: between-groups heterogeneity; df: degrees of freedom.
Figure 3Scatter plot comparison of has-miR-21-5p across 6 datasets.
Figure 4(A) Venn diagram of common genes (28) between under-expressed genes in HNSCC tumors and miR-21-5p target genes. (B) The STRING protein network of interactions between the 28 common genes; the minimum required interaction score was set at low confidence (0.150) and clustered with the MCL (Markov Cluster Algorithm) clustering with an inflation parameter of 2. (C) Gene annotation of the miR-21 potential targets in HNSCC together with associated biological function with the g:Profiler online tool. The genes are involved in vasculature development, cardiovascular system, cell surface receptor signaling pathway, blood vessel development, tube development, circulatory system development, regulation of locomotion, angiogenesis, and anatomical structure formation. Some of these genes also regulate commissural axon pathfinding, and RUNX1 (Runt-related transcription factor 1) expression and activity.
The list of common genes between miR-21-5p targets and genes under-expressed in HNSCC tumors versus normal adjacent tissue).
| Full Name | Abbreviation |
|---|---|
| Argonaute RISC Catalytic Component 2 | AGO2 |
| Allograft Inflammatory Factor 1 Like | AIF1L |
| Chromosome 1 Open Reading Frame 112 | C1orf112 |
| C-C Motif Chemokine Ligand 20 | CCL20 |
| Cyclin Dependent Kinase 6 | CDK6 |
| Ciliary Neurotrophic Factor Receptor | CNTFR |
| Collagen Type IV Alpha 1 Chain | COL4A1 |
| Endothelial Cell Specific Molecule 1 | ESM1 |
| Fibroblast Growth Factor 7 | FGF7 |
| GLIS Family Zinc Finger 2 | GLIS2 |
| Jagged Canonical Notch Ligand 1 | JAG1 |
| Melanoma Cell Adhesion Molecule | MCAM |
| Neural EGFL Like 2 | NELL2 |
| Neuropilin And Tolloid Like 2 | NETO2 |
| Neurotrophin 3 | NTF3 |
| Oxidized Low Density Lipoprotein Receptor 1 | OLR1 |
| Odd-Skipped Related Transcription Factor 1 | OSR1 |
| Poly(A) Binding Protein Interacting Protein 2B | PAIP2B |
| Programmed Cell Death 4 | PDCD4 |
| Proline And Serine Rich Coiled-Coil 1 | PSRC1 |
| Roundabout Guidance Receptor 2 | ROBO2 |
| Radical S-Adenosyl Methionine Domain Containing 2 | RSAD2 |
| SAM And SH3 Domain Containing 1 | SASH1 |
| Secernin 1 | SCRN1 |
| Sprouty RTK Signaling Antagonist 4 | SPRY4 |
| Sarcalumenin | SRL |
| Transforming Growth Factor Beta Induced | TGFΒI |
| Tensin 1 | TNS1 |
Figure 5(A) Kaplan-Meier survival plots for miR-21 targets with statistically significant correlation with overall survival rate of HNSCC patients. These are: NETO2, CDK6, OLR1, NTF3, and TGFBI. (B) “r” values resulted from Pearson correlation analysis between miR-21 expression value and the expression of 28 potential targeted genes in HNSCC.
Figure 6MiR-21 oncogenic role in head and neck cancers according to the data presented in the literature. miR-21 supports cancer development through the inhibition of tumor suppressor genes and the activation of the oncogenic signaling involved in proliferation, pro-inflammatory environments, invasion and metastasis, and resistance to chemotherapy.