Literature DB >> 31763794

CRISPR-Cas9-Guided Genome Engineering in Caenorhabditis elegans.

Hyun-Min Kim1, Monica P Colaiácovo2.   

Abstract

The CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated protein) system is being used successfully for efficient and targeted genome editing in various organisms, including the nematode Caenorhabditis elegans. Recent studies have developed a variety of CRISPR-Cas9 approaches to enhance genome engineering via two major DNA double-strand break repair pathways: nonhomologous end joining and homologous recombination. Here, we describe a protocol for Cas9-mediated C. elegans genome editing together with single guide RNA (sgRNA) and repair template cloning (canonical marker-free and cassette selection methods), as well as injection methods required for delivering Cas9, sgRNAs, and repair template DNA into the germline.
© 2019 by John Wiley & Sons, Inc. Basic Protocol 1: Guide RNA preparation Alternate Protocol 1: sgRNA cloning using fusion PCR Basic Protocol 2: Preparation of a repair template for homologous recombination Alternate Protocol 2: Preparation of repair template donors for the cassette selection method Basic Protocol 3: Injecting animals Basic Protocol 4: Screening transgenic worms with marker-free method Alternate Protocol 3: Screening transgenic worms with cassette selection method. © 2019 John Wiley & Sons, Inc.

Entities:  

Keywords:  C. elegans; CRISPR; CRISPR-Cas; Cas9; genome editing; genome engineering

Mesh:

Substances:

Year:  2019        PMID: 31763794      PMCID: PMC6905509          DOI: 10.1002/cpmb.106

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  24 in total

1.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

Review 2.  CRISPR/Cas, the immune system of bacteria and archaea.

Authors:  Philippe Horvath; Rodolphe Barrangou
Journal:  Science       Date:  2010-01-08       Impact factor: 47.728

3.  Streamlined Genome Engineering with a Self-Excising Drug Selection Cassette.

Authors:  Daniel J Dickinson; Ariel M Pani; Jennifer K Heppert; Christopher D Higgins; Bob Goldstein
Journal:  Genetics       Date:  2015-06-03       Impact factor: 4.562

4.  Dramatic enhancement of genome editing by CRISPR/Cas9 through improved guide RNA design.

Authors:  Behnom Farboud; Barbara J Meyer
Journal:  Genetics       Date:  2015-02-18       Impact factor: 4.562

5.  New Insights into the Post-Translational Regulation of DNA Damage Response and Double-Strand Break Repair in Caenorhabditis elegans.

Authors:  Hyun-Min Kim; Monica P Colaiácovo
Journal:  Genetics       Date:  2015-03-26       Impact factor: 4.562

6.  Oligonucleotide-based targeted gene editing in C. elegans via the CRISPR/Cas9 system.

Authors:  Pei Zhao; Zhe Zhang; Hongmei Ke; Yiren Yue; Ding Xue
Journal:  Cell Res       Date:  2014-01-14       Impact factor: 25.617

7.  A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites.

Authors:  B D Williams; B Schrank; C Huynh; R Shownkeen; R H Waterston
Journal:  Genetics       Date:  1992-07       Impact factor: 4.562

8.  Improved Mos1-mediated transgenesis in C. elegans.

Authors:  Christian Frøkjær-Jensen; M Wayne Davis; Michael Ailion; Erik M Jorgensen
Journal:  Nat Methods       Date:  2012-01-30       Impact factor: 28.547

9.  DNA Damage Sensitivity Assays in Caenorhabditis elegans.

Authors:  Hyun-Min Kim; Monica P Colaiácovo
Journal:  Bio Protoc       Date:  2015-06-05

10.  Efficient Genome Editing in Caenorhabditis elegans with a Toolkit of Dual-Marker Selection Cassettes.

Authors:  Adam D Norris; Hyun-Min Kim; Mónica P Colaiácovo; John A Calarco
Journal:  Genetics       Date:  2015-07-30       Impact factor: 4.562

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  4 in total

1.  An affordable plasmid miniprep suitable for proficient microinjection in Caenorhabditis elegans.

Authors:  Hyun-Min Kim; Sisi Tian; Shouyue Wang
Journal:  3 Biotech       Date:  2020-07-22       Impact factor: 2.406

Review 2.  Quo Vadis Caenorhabditis elegans Metabolomics-A Review of Current Methods and Applications to Explore Metabolism in the Nematode.

Authors:  Liesa Salzer; Michael Witting
Journal:  Metabolites       Date:  2021-04-29

3.  Methods for Rapid Protein Depletion in C. elegans using Auxin-Inducible Degradation.

Authors:  Nikita S Divekar; Hannah E Horton; Sarah M Wignall
Journal:  Curr Protoc       Date:  2021-02

4.  MINERVA: A CubeSat for demonstrating DNA damage mitigation against space radiation in C. elegans by using genetic modification.

Authors:  Sumeth Klomchitcharoen; Tanchanok Tangwattanasirikun; Sean Gallup; Noparin Smerwong; Peetimon Arunwiriyakit; Pisitchai Tachavises; Jin Tangkijngamwong; Pichamon Phatthanaanukun; Benjamard Jirapanyalerd; Siripak Chattanupakorn; Visarut Rungpongvanich; Norawit Nangsue; Krai Meemon; Patompon Wongtrakoonkate; Suradej Hongeng; Yodchanan Wongsawat
Journal:  Heliyon       Date:  2022-08-17
  4 in total

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