| Literature DB >> 31763573 |
Anak A R Sudewi1, Ni M Susilawathi1, Bayu K Mahardika2, Agung N Mahendra1, Made Pharmawati3, Mark A Phuong4, Gusti N Mahardika2,5.
Abstract
Many conotoxins, natural peptides of marine cone snails, have been identified to target neurons. Here, we provide data on pharmacological families of the conotoxins of 11 species of cone snails collected in Bali. The identified definitive pharmacological families possibly targeting neuronal tissues were α (alpha), ι (iota), κ (kappa), and ρ (rho). These classes shall target nicotinic acetylcholine receptors, voltage-gated Na channels, voltage-gated K channels, and α1-adrenoceptors, respectively. The VI/VII-O3 conotoxins might be prospected as an inhibitor of N-methyl-d-aspartate. Con-ikot-ikot could be applied as an α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptor blocker medicine. The definitive pharmacology classes of conotoxins as well as those yet to be elucidated need to be further established and verified.Entities:
Year: 2019 PMID: 31763573 PMCID: PMC6868881 DOI: 10.1021/acsomega.9b03122
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Pharmacological Classes of Conotoxins Discovered in Various Venomous Marine Cone Snails in Bali, Indonesia, Based on Pharmacological Family and Cysteine Frameworka
| DPF | divergent | NGPF | UGFSF | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| species | A | I | K | R | DCPF | NAPF | Div1 | Div2 | NPGF1 | NPGF2 | NPGF3 | NPGF4 | NPGF5 | NGFCFC | SF-04 | SF-mi1 | SF-mi2 | UKC |
| 9 | 20 | 7 | 0 | 128 | 45 | 0 | 1 | 2 | 0 | 1 | 1 | 2 | 48 | 2 | 2 | 0 | 58 | |
| 11 | 2 | 9 | 0 | 158 | 44 | 4 | 0 | 0 | 0 | 0 | 13 | 1 | 30 | 1 | 10 | 0 | 48 | |
| 10 | 0 | 0 | 0 | 13 | 11 | 4 | 0 | 2 | 1 | 0 | 0 | 0 | 12 | 0 | 2 | 2 | 18 | |
| 1 | 2 | 2 | 0 | 29 | 3 | 2 | 0 | 0 | 0 | 2 | 3 | 0 | 19 | 0 | 0 | 0 | 7 | |
| 14 | 0 | 8 | 1 | 92 | 27 | 0 | 0 | 5 | 1 | 2 | 2 | 0 | 47 | 2 | 0 | 1 | 42 | |
| 0 | 1 | 0 | 3 | 19 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 11 | |
| 2 | 0 | 5 | 0 | 42 | 7 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 22 | 1 | 0 | 4 | 9 | |
| 11 | 0 | 3 | 0 | 20 | 34 | 1 | 1 | 4 | 0 | 0 | 2 | 2 | 10 | 0 | 2 | 3 | 9 | |
| 5 | 10 | 2 | 0 | 199 | 31 | 5 | 0 | 3 | 2 | 1 | 0 | 0 | 60 | 2 | 7 | 3 | 71 | |
| 3 | 2 | 3 | 0 | 71 | 25 | 1 | 0 | 0 | 1 | 0 | 8 | 0 | 48 | 0 | 0 | 3 | 33 | |
| 0 | 0 | 15 | 0 | 53 | 9 | 0 | 0 | 3 | 1 | 1 | 0 | 0 | 14 | 1 | 1 | 1 | 13 | |
| total | 66 | 37 | 54 | 4 | 824 | 237 | 17 | 2 | 21 | 8 | 8 | 29 | 5 | 315 | 9 | 24 | 17 | 319 |
DPF = definitive pharmacological family; DCPF = definitive combined pharmacological family; NAPF = nonalphabetical pharmacological family; DGF = divergent gene family; Div1 = DivMKFPLLFISL; Div2 = DivMKVAVVLLVS; NPGF = newly proposed gene family (NPGF); NPGF1 = MEFRR; NPGF2 = MKFLL; NPGF3 = MKISL; NPGF4 = MMLFM; NPGF5 = MRFYM;[30] NGFCFC = novel gene family and cysteine framework combination; UGF = unassigned gene family;[1] UKC = unknown conotoxin.
Number of Conotoxin Peptides Clustered in DCPF and NAPF Identified in Various Species Marine Cone Snails Found in Bali, Indonesiaa
| DCPF | NAPF | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| species | α/ι/κ/μ | α/κ/μ | α/κ | α/ρ | α/σ | δ/γ/κ/μ/ω | ε/μ/τ | γ/ω | CII | CKNZ | CNDP | CNPR | CNPS |
| 2 | 11 | 3 | 14 | 4 | 80 | 7 | 7 | 26 | 13 | 4 | 0 | 2 | |
| 45 | 13 | 0 | 9 | 0 | 67 | 12 | 12 | 21 | 10 | 3 | 8 | 2 | |
| 4 | 0 | 0 | 0 | 0 | 8 | 0 | 1 | 1 | 2 | 5 | 1 | 2 | |
| 6 | 0 | 0 | 1 | 1 | 9 | 7 | 5 | 0 | 0 | 0 | 2 | 1 | |
| 20 | 2 | 0 | 16 | 0 | 31 | 16 | 7 | 14 | 11 | 0 | 2 | 0 | |
| 6 | 0 | 0 | 0 | 1 | 1 | 9 | 2 | 0 | 1 | 0 | 0 | 0 | |
| 8 | 1 | 0 | 8 | 0 | 16 | 1 | 8 | 4 | 0 | 2 | 0 | 1 | |
| 2 | 2 | 0 | 0 | 1 | 11 | 3 | 1 | 17 | 6 | 2 | 8 | 1 | |
| 14 | 5 | 0 | 3 | 0 | 125 | 32 | 20 | 9 | 12 | 7 | 0 | 3 | |
| 12 | 1 | 0 | 7 | 5 | 24 | 19 | 3 | 8 | 2 | 4 | 7 | 4 | |
| 2 | 0 | 0 | 5 | 0 | 28 | 13 | 5 | 1 | 1 | 3 | 0 | 4 | |
| total | 121 | 35 | 3 | 63 | 12 | 400 | 119 | 71 | 101 | 58 | 30 | 28 | 20 |
CII = con-ikot-ikot; CKNZ = conkunitzin; CNDP = conodipin; CNPR = conoporin; CNPS = conophysin.
Number of Conotoxin Peptides of Novel Pharmacological Family with Definitive Cysteine Framework and Gene Superfamilies Identified in Each Speciesa
| CF and GF combinations | species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CF | GF | total | |||||||||||
| IX | P | 17 | 9 | 1 | 11 | 4 | 0 | 0 | 2 | 16 | 12 | 0 | 72 |
| XV | V | 4 | 3 | 0 | 0 | 19 | 0 | 6 | 0 | 2 | 0 | 3 | 37 |
| XI | I3 | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 16 | 0 | 24 |
| XV | N | 4 | 3 | 2 | 1 | 4 | 0 | 1 | 2 | 1 | 0 | 6 | 24 |
| XXII | E | 4 | 3 | 0 | 1 | 2 | 3 | 3 | 1 | 2 | 2 | 0 | 21 |
| XIX | N | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 8 | 0 | 17 |
| XII | I4 | 2 | 8 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 14 |
| XV | O2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 10 | 1 | 0 | 14 |
| XVII | Y | 2 | 0 | 1 | 0 | 2 | 0 | 1 | 0 | 5 | 0 | 2 | 13 |
| XII | U | 0 | 0 | 0 | 0 | 2 | 0 | 5 | 0 | 4 | 0 | 1 | 12 |
| VI/VII | V | 0 | 0 | 1 | 0 | 9 | 0 | 0 | 0 | 1 | 0 | 0 | 11 |
| VI/VII | U | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 0 | 0 | 7 |
| XVI | Q | 0 | 0 | 0 | 0 | 4 | 0 | 3 | 0 | 0 | 0 | 0 | 7 |
| XVI | T | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 |
| IX | M | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 6 |
| XVI | M | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 6 |
| XXIII | K | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 6 |
| XIV | T | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 4 |
| XVIII | I2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 |
| XVIII | O1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
Listed from the most frequent; CF = cysteine framework; GF = gene superfamily; single peptide combinations were not shown. These were XX—D, IX—E, XII—I2, VI/VII—I4, IX—N, I—O1, XII—O1, XVIII—O1, XIV—O3, III—Q.
Representatives of the Conotoxins Possibly Targeting Neuronal Tissues Found in Bali, Indonesia, and the Result of PDB Search
| conotoxin
name | species | cysteine framework | gene superfamily | pharmacological class | PDB search (% confidence/PID) |
|---|---|---|---|---|---|
| CoM22 | I | M | α | none | |
| RtM11 | II | M | α | metallothionein mt_nc (65.3/67) | |
| ArL1 | XIV | L | α | none | |
| ArD1 | XX | D | α | αd-conotoxin gexxa (99.9/49) | |
| ArI110 | XI | I1 | ι | conotoxin g117 (85.9/41) | |
| LiA58 | VI/VII | A | κ | α-conotoxin vc1a (85.4/60) | |
| ArI21 | XI | I2 | κ | none | |
| ArO130 | XI | O1 | κ | aptotoxin vii (79.77/88) | |
| LiM43 | XXVII | M | κ | none | |
| LiT8 | I | T | ρ | none | |
| LiO32 | VI/VII | O3 | NMDA blocker | none | |
| ArCII1 | V | UK | CII/AMPA blocker | defensin, α (47.5/55) | |
| ArCII16 | XXI | UK | CII/AMPA blocker | con-ikot-ikot (100/38) | |
| ArCII12 | UK | UK | CII/AMPA blocker | none |
The first two characters are abbreviated species name, followed by gene superfamily and the number of the sequence in the database as previously published;[30] PID = percentage of identity; NMDA blocker = putative NMDA blocker; AMPA blocker = putative AMPA blocker; UK = unknown; CII = con-ikot-ikot.
Only search results of confidence level of >40% are shown; PDB search was conducted in website http://www.sbg.bio.ic.ac.uk/?phyre2/html/page.cgi?id=index.[33]
Figure 1Final model of the mature peptide region of the representatives of the conotoxins possibly targeting neuronal tissues found in Bali,Indonesia. The peptide names are the same as described in Table . The N-proregion was included in the modeling for the mature peptides of less than 30 residues. Modeling was conducted at http://www.sbg.bio.ic.ac.uk/?phyre2/html/page.cgi?id=index.[33]