Literature DB >> 31760453

Isolation and Complete Genome of the Marine Pseudoalteromonas Phage C7 from Coastal Seawater of Yellow Sea, China.

Qi Wang1, Yundan Liu1, Qian Liu1, Xinxin Liu1, Fan Yang1, Min Wang1,2,3, Hongbing Shao1, Yong Jiang4,5,6.   

Abstract

A novel Pseudoalteromonas atlantica phage C7 was isolated from the coastal surface water in the Yellow Sea of China using the agar overlay method. Transmission electron microscopy analysis reveals that it belongs to Siphoviridae with a head of 56 nm in diameter and a tail of 102 nm in length. Microbiological characterization suggests that the phage is stable at a range of temperatures (from - 20 to 65 °C) and the optimal pH range is 6-12. One-step growth curve shows a 45-min latent period and a 105-min rise period. Genomic analysis shows that C7 has a linear, double-stranded 42,261-bp DNA molecule with 40.6% GC content and 76 putative open reading frames (ORFs) with one tRNA. The ORFs are classified into six functional groups as follows: hypothetical protein, phage structure, phage packaging, DNA replication and regulation, transcription, and some additional functions. There are many obviously similarities between C7 and a previously published Pseudoalteromonas phage vB_PspS-H40/1 by genomic comparison. This study provides an important data for further research on the interaction between marine bacteriophages and their hosts.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31760453     DOI: 10.1007/s00284-019-01815-4

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  24 in total

1.  Primer-initiated sequence synthesis to detect and assemble structural variants.

Authors:  Andreas Massouras; Korneel Hens; Carine Gubelmann; Swapna Uplekar; Frederik Decouttere; Jacques Rougemont; Stewart T Cole; Bart Deplancke
Journal:  Nat Methods       Date:  2010-06-13       Impact factor: 28.547

2.  Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea.

Authors:  Yan Li; Min Wang; Qian Liu; Xue Song; Duobing Wang; Yu Ma; Hongbing Shao; Yong Jiang
Journal:  Curr Microbiol       Date:  2016-02-08       Impact factor: 2.188

Review 3.  Viruses in the sea.

Authors:  Curtis A Suttle
Journal:  Nature       Date:  2005-09-15       Impact factor: 49.962

Review 4.  RNA viruses in the sea.

Authors:  Andrew S Lang; Matthew L Rise; Alexander I Culley; Grieg F Steward
Journal:  FEMS Microbiol Rev       Date:  2009-03       Impact factor: 16.408

5.  Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses.

Authors:  E J van Hannen; G Zwart; M P van Agterveld; H J Gons; J Ebert; H J Laanbroek
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

6.  Characterization and Complete Genome Sequence of a Novel Siphoviridae Bacteriophage BS5.

Authors:  Xue Meng; Min Wang; Siyuan You; Duobing Wang; Yan Li; Zhaoyang Liu; Yu Gao; Lu Liu; Yaoyuan Zhang; Zhenghao Yan; Chunyan Liu; Yong Jiang; Hongbing Shao
Journal:  Curr Microbiol       Date:  2017-04-20       Impact factor: 2.188

7.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

8.  An oncolytic vaccinia virus expressing the human sodium iodine symporter prolongs survival and facilitates SPECT/CT imaging in an orthotopic model of malignant pleural mesothelioma.

Authors:  Laurence J Belin; Justin W Ady; Christina Lewis; Drew Marano; Sepideh Gholami; Kelly Mojica; Clarisse Eveno; Valerie Longo; Pat B Zanzonico; Nanhai G Chen; Aladar A Szalay; Yuman Fong
Journal:  Surgery       Date:  2013-07-23       Impact factor: 3.982

9.  Toward almost closed genomes with GapFiller.

Authors:  Marten Boetzer; Walter Pirovano
Journal:  Genome Biol       Date:  2012-06-25       Impact factor: 13.583

10.  Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies.

Authors:  René Kallies; Bärbel Kiesel; Matthias Schmidt; Johannes Kacza; Nawras Ghanem; Anja Narr; Jakob Zopfi; Lukas Y Wick; Jörg Hackermüller; Hauke Harms; Antonis Chatzinotas
Journal:  Stand Genomic Sci       Date:  2017-02-02
View more
  1 in total

1.  Comparative analysis of chloroplast genomes reveals phylogenetic relationships and intraspecific variation in the medicinal plant Isodon rubescens.

Authors:  Conglong Lian; Hao Yang; Jinxu Lan; Xueyu Zhang; Fei Zhang; Jingfan Yang; Suiqing Chen
Journal:  PLoS One       Date:  2022-04-06       Impact factor: 3.240

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.