Literature DB >> 20543844

Primer-initiated sequence synthesis to detect and assemble structural variants.

Andreas Massouras, Korneel Hens, Carine Gubelmann, Swapna Uplekar, Frederik Decouttere, Jacques Rougemont, Stewart T Cole, Bart Deplancke.   

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Year:  2010        PMID： 20543844     DOI： 10.1038/nmeth.f.308

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

Authors:  J J Emerson; Margarida Cardoso-Moreira; Justin O Borevitz; Manyuan Long
Journal:  Science       Date:  2008-06-05       Impact factor: 47.728

2.  Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Authors:  Heng Li; Jue Ruan; Richard Durbin
Journal:  Genome Res       Date:  2008-08-19       Impact factor: 9.043

Review 3.  Computational methods for discovering structural variation with next-generation sequencing.

Authors:  Paul Medvedev; Monica Stanciu; Michael Brudno
Journal:  Nat Methods       Date:  2009-11       Impact factor: 28.547

4.  A portrait of copy-number polymorphism in Drosophila melanogaster.

Authors:  Erik B Dopman; Daniel L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-04       Impact factor: 11.205

5.  BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.

Authors:  Ken Chen; John W Wallis; Michael D McLellan; David E Larson; Joelle M Kalicki; Craig S Pohl; Sean D McGrath; Michael C Wendl; Qunyuan Zhang; Devin P Locke; Xiaoqi Shi; Robert S Fulton; Timothy J Ley; Richard K Wilson; Li Ding; Elaine R Mardis
Journal:  Nat Methods       Date:  2009-08-09       Impact factor: 28.547

6.  Systems genetics of complex traits in Drosophila melanogaster.

Authors:  Julien F Ayroles; Mary Anna Carbone; Eric A Stone; Katherine W Jordan; Richard F Lyman; Michael M Magwire; Stephanie M Rollmann; Laura H Duncan; Faye Lawrence; Robert R H Anholt; Trudy F C Mackay
Journal:  Nat Genet       Date:  2009-02-22       Impact factor: 38.330
  6 in total
  17 in total

1.  Isolation and Complete Genome Sequence of a Novel Pseudoalteromonas Phage PH357 from the Yangtze River Estuary.

Authors:  Zheng Gong; Min Wang; Qingwei Yang; Zhongshi Li; Jun Xia; Yu Gao; Yong Jiang; Xue Meng; Zhaoyang Liu; Ding Yang; Fangfei Zhang; Hongbing Shao; Duobing Wang
Journal:  Curr Microbiol       Date:  2017-04-20       Impact factor: 2.188

2.  Isolation and Complete Genome of the Marine Pseudoalteromonas Phage C7 from Coastal Seawater of Yellow Sea, China.

Authors:  Qi Wang; Yundan Liu; Qian Liu; Xinxin Liu; Fan Yang; Min Wang; Hongbing Shao; Yong Jiang
Journal:  Curr Microbiol       Date:  2019-11-23       Impact factor: 2.188

3.  Genomic sequencing and characterization of cynomolgus macaque cytomegalovirus.

Authors:  Angie K Marsh; David O Willer; Aruna P N Ambagala; Misko Dzamba; Jacqueline K Chan; Richard Pilon; Jocelyn Fournier; Paul Sandstrom; Michael Brudno; Kelly S MacDonald
Journal:  J Virol       Date:  2011-10-12       Impact factor: 5.103

4.  Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa.

Authors:  Yao Xiao; Min Chen; Jian Chen; Li-Na Mao; Yi-Ru Peng; Shan-Shan Gui; Bing-Huo Zhang
Journal:  J Antibiot (Tokyo)       Date:  2022-09-27       Impact factor: 3.424

5.  WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data.

Authors:  Andreas Massouras; Frederik Decouttere; Korneel Hens; Bart Deplancke
Journal:  Nucleic Acids Res       Date:  2010-05-25       Impact factor: 16.971

6.  Ultra high throughput sequencing in human DNA variation detection: a comparative study on the NDUFA3-PRPF31 region.

Authors:  Paola Benaglio; Carlo Rivolta
Journal:  PLoS One       Date:  2010-09-29       Impact factor: 3.240

7.  CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces.

Authors:  Ilia Zhidkov; Raphael Cohen; Nophar Geifman; Dan Mishmar; Eitan Rubin
Journal:  Nucleic Acids Res       Date:  2011-01-28       Impact factor: 16.971

8.  Short term evolution of a highly transmissible methicillin-resistant Staphylococcus aureus clone (ST228) in a tertiary care hospital.

Authors:  Valérie Vogel; Laurent Falquet; Sandra P Calderon-Copete; Patrick Basset; Dominique S Blanc
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

9.  The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation.

Authors:  Armand Valsesia; Aurélien Macé; Sébastien Jacquemont; Jacques S Beckmann; Zoltán Kutalik
Journal:  Front Genet       Date:  2013-05-30       Impact factor: 4.599

10.  Genomic variation and its impact on gene expression in Drosophila melanogaster.

Authors:  Andreas Massouras; Sebastian M Waszak; Monica Albarca-Aguilera; Korneel Hens; Wiebke Holcombe; Julien F Ayroles; Emmanouil T Dermitzakis; Eric A Stone; Jeffrey D Jensen; Trudy F C Mackay; Bart Deplancke
Journal:  PLoS Genet       Date:  2012-11-15       Impact factor: 5.917
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