| Literature DB >> 31750241 |
Ya Jing Zhao1,2, Xingguo Song3, Limin Niu1,2, Youyong Tang1,2, Xianrang Song2, Li Xie2.
Abstract
Background: Circulating exosomal miRNAs are potential non-invasive biomarkers for colorectal cancer. The present study aimed to validate the novel sensitive and specific exosomal miRNA biomarkers for diagnosing colorectal cancer (CRC). Patients andEntities:
Keywords: colorectal cancer; diagnosis; exosomes; miR-150-5p; miR-99b-5p
Year: 2019 PMID: 31750241 PMCID: PMC6842995 DOI: 10.3389/fonc.2019.01129
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Identification of isolated exosomes. (A) TEM image showed representative data of exosomes from CRC patients with 50–150 nm diameter of the tumors (scale bar: 50 nm; high voltage (HV) = 100 kV). (B) Distribution of exosomes with 50–150 nm diameter; the samples were obtained from CRC patients based on the qNano system. (C) Western blot analysis of CD63, TSG101, and GM130 as exosomal markers.
Figure 2Exosomal miRNA profile of the CRC patients. (A) A heat map was generated after supervised hierarchical cluster analysis. The differential miRNA expression is shown in red (upregulation) vs. blue (downregulation) (p < 0.05). (B) Volcano plot compared the expression fold-change of exosomal miRNA in CRC patients vs. healthy donors. The red dots represent the upregulated miRNA, and the green dots represent the downregulated miRNA. (C) Candidate target gene KEGG enrichment analysis.
Down-regulated miRNA of CRC patients.
| hsa-miR-122-5p | −3.3755 | 1.28E-08 | Down |
| hsa-miR-3591-3p | −3.3753 | 1.28E-08 | Down |
| hsa-miR-511-5p | −2.8280 | 0.0009006 | Down |
| hsa-miR-150-3p | −2.6818 | 0.0003886 | Down |
| hsa-miR-150-5p | −2.6076 | 8.83E-07 | Down |
| hsa-miR-30a-5p | −2.4679 | 2.09E-11 | Down |
| hsa-miR-342-5p | −2.3353 | 0.001128 | Down |
| hsa-miR-10b-3p | −2.2874 | 0.0001459 | Down |
| hsa-miR-99a-5p | −2.2484 | 1.55E-05 | Down |
| hsa-miR-99b-5p | −2.2347 | 0.0003671 | Down |
| hsa-miR-95-3p | −2.2156 | 0.0002078 | Down |
| hsa-miR-125a-5p | −2.1529 | 0.0001209 | Down |
| hsa-miR-30a-3p | −2.0763 | 8.51E-06 | Down |
| hsa-miR-29a-3p | −2.0544 | 0.0002452 | Down |
| hsa-miR-125b-5p | −1.9581 | 0.001341 | Down |
| hsa-miR-10b-5p | −1.9510 | 0.0027488 | Down |
| hsa-miR-126-3p | −1.9419 | 0.000115 | Down |
| hsa-miR-100-5p | −1.8859 | 4.98E-07 | Down |
| hsa-miR-27a-3p | −1.7803 | 0.0015575 | Down |
| hsa-miR-146b-5p | −1.5288 | 0.0017378 | Down |
Up-regulated miRNA of CRC patients.
| hsa-miR-151a-5p | 2.4013 | 4.57E-05 | Up |
| hsa-miR-454-3p | 2.2795 | 0.0028966 | Up |
| hsa-miR-183-5p | 2.2725 | 0.0004991 | Up |
| hsa-miR-182-5p | 2.590 | 0.0005314 | Up |
| hsa-miR-1-3p | 2.1931 | 2.59E-05 | Up |
| hsa-miR-493-5p | 2.2099 | 0.0037373 | Up |
| hsa-miR-15b-3p | 1.9826 | 0.0035878 | Up |
| hsa-miR-151b | 1.9599 | 0.0035665 | Up |
| hsa-miR-584-5p | 1.5983 | 0.0041064 | Up |
Figure 3Characterization of identified two serum exosomal miRNAs. (A) Expression levels of miR-99b-5p and miR-150-5p from serum exosome (EXO) and exosome-depleted supernatant (EDS). (B) qRT-PCR analysis of the two miRNAs in the exosomes or isolated nucleic acids treated with RNase A. (C,D) The expressions of the two serum exosomal miRNAs when incubated at room temperature (**p < 0.01, ns, not siginificant).
Figure 4Exosomal miR-99b-5p and miR-150-5p as biomarkers for CRC. (A,B) The scatter plot compared the exosomal miR-99b-5p and miR-150-5p levels in the serum of healthy donors (n = 153), patients with benign diseases (n = 20), and CRC patients (n = 165) (**p < 0.01, ****p < 0.0001). (C) The AUC of serum exosomal miR-99b-5p was 0.628 in 165 CRC patients and 153 healthy donors. (D) The AUC of serum exosomal miR-150-5p was 0.707 in 165 CRC patients and 153 healthy donors. (E,F) The scatter blot compared the exosomal miR-99b-5p and miR-150-5p levels in healthy donors (n = 153) with early CRC patients (n = 72) (****p < 0.0001). (G) The AUC of serum exosomal miR-99b-5p was 0.652 in 72 early CRC patients and 153 healthy donors. (H) The AUC of serum exosomal miR-150-5p was 0.736 in 72 early CRC patients and 153 healthy donors.
Characteristics of CRC patients for differentially expressed exosomal miR-99b-5p and miR-150-5p.
| <61 | 80 | 4.4925 (4.132–4.7335) | 0.32 | 0.7100 (0.5593–1.2125) | 0.944 |
| ≥61 | 85 | 4.035 (3.9589–4.6436) | 0.8395 (0.5322–1.2309) | ||
| Male | 110 | 4.5175 (4.2584–4.8499) | 0.019 | 1.055 (0.8336–1.4138) | 0.002 |
| Female | 55 | 3.865 (3.6622–4.3111) | 0.2450 (0.0832–0.8241) | ||
| Yes | 31 | 4.0550 (3.7801–4.9247) | 0.998 | 0.5800 (0.1881–0.9613) | 0.183 |
| No | 134 | 4.300 (4.1042–4.6020) | 0.7700 (0.7079–1.2540) | ||
| Yes | 21 | 4.675 (3.6963–4.9389) | 0.92 | 0.495 (−0.0834–1.4948) | 0.571 |
| No | 144 | 4.21 (4.1220–4.6148) | 0.7375 (0.6875–1.1773) | ||
| Rectum | 102 | 4.1025 (3.9865–4.5526) | 0.276 | 0.63 (0.5015–1.0566) | 0.087 |
| Colon | 63 | 4.3800 (4.1446–4.9102) | 1.06 (0.6806–1.5127) | ||
| <30 | 52 | 4.4925 (3.8953–4.7947) | 0.926 | 0.3525(0.2954–1.1800) | 0.241 |
| ≥30 | 63 | 4.1900 (4.0147–4.7632) | 1.050(0.7042–1.4445) | ||
| Unknown | 50 | ||||
| Yes | 88 | 4.2675 (3.986–4.6219) | 0.629 | 0.6400 (0.4981–1.1705) | 0.356 |
| No | 74 | 4.210 (4.0896–4.7637) | 0.9275 (0.6361–1.295) | ||
| Unknown | 3 | ||||
| Yes | 37 | 4.5200 (3.8842–4.978) | 0.862 | 0.715 (0.5686–1.6924) | 0.844 |
| No | 128 | 4.210 (4.1002–4.5993) | 0.7550 (0.5788–1.0888) | ||
Figure 5Exosomal miR-99b-5p and miR-150-5p levels reflect tumor retention. (A,B) The serum exosomal miR-99b-5p and miR-150-5p levels were significantly higher in the postoperative samples than in the preoperative samples (**p < 0.01, ****p < 0.0001).