| Literature DB >> 31747721 |
Rui-Xi Hua1,2, Zhenjian Zhuo1, Lili Ge3, Jinhong Zhu1,4, Li Yuan1, Chongfen Chen3, Jing Liu3, Jiwen Cheng5, Haixia Zhou6, Jiao Zhang7, Huimin Xia1, Xianwei Zhang8, Jing He1.
Abstract
Neuroblastoma ranks the most common seen solid tumour in childhood. Overexpression of LIN28A gene has been linked to the development of multiple human malignancies, but the relationship between LIN28A single nucleotide polymorphisms (SNPs) and neuroblastoma susceptibility is still under debate. Herein, we evaluated the correlation of four potentially functional LIN28A SNPs (rs3811464 G>A, rs3811463 T>C, rs34787247 G>A, and rs11247957 G>A) and neuroblastoma susceptibility in 505 neuroblastoma patients and 1070 controls from four independent hospitals in China. The correlation strengths were determined by using odds ratios (ORs) and corresponding 95% confidence intervals (CIs). Among these SNPs, rs34787247 G>A exhibited a significant association with increased susceptibility in neuroblastoma (GA vs GG: adjusted OR = 1.30, 95% CI = 1.03-1.64; AA vs GG: adjusted OR = 2.51, 95% CI = 1.36-4.64, AA/GA vs GG: adjusted OR = 1.42, 95% CI = 1.12-1.80, AA vs GG/GA: adjusted OR = 2.39, 95% CI = 1.29-4.42). Furthermore, the combined analysis of risk genotypes revealed that subjects carrying three risk genotypes (adjusted OR = 1.64, 95% CI = 1.02-2.63) are more inclined to develop neuroblastoma than those without risk genotype, and so do carriers of 1-4 risk genotypes (adjusted OR = 1.26, 95% CI = 1.01-1.56). Stratification analysis further revealed risk effect of rs3811464 G>A, rs34787247 G>A and 1-4 risk genotypes in some subgroups. Haplotype analysis of these four SNPs yields two haplotypes significantly correlated with increased neuroblastoma susceptibility. Overall, our finding indicated that LIN28A SNPs, especially rs34787247 G>A, may increase neuroblastoma risk.Entities:
Keywords: zzm321990LIN28Azzm321990; case-control study; neuroblastoma; polymorphism; risk
Mesh:
Substances:
Year: 2019 PMID: 31747721 PMCID: PMC6933387 DOI: 10.1111/jcmm.14827
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
Association between LIN28A gene polymorphisms and neuroblastoma susceptibility
| Genotype | Cases (N = 505) | Controls (N = 1070) |
| Crude OR (95% CI) |
| Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|---|
| No. (%) | No. (%) | ||||||
| rs3811464 G>A (HWE = 0.063) | |||||||
| GG | 359 (71.09) | 790 (73.83) | 1.00 | 1.00 | |||
| GA | 123 (24.36) | 250 (23.36) | 1.10 (0.87‐1.39) | .440 | 1.09 (0.87‐1.38) | .452 | |
| AA | 23 (4.55) | 30 (2.80) | 1.71 (0.99‐2.96) | .057 | 1.70 (0.98‐2.96) | .058 | |
| Additive | .115 | 1.17 (0.96‐1.43) | .116 | 1.17 (0.96‐1.43) | .114 | ||
| Dominant | 146 (28.91) | 280 (26.17) | .253 | 1.15 (0.91‐1.45) | .253 | 1.15 (0.91‐1.45) | .250 |
| Recessive | 482 (95.45) | 1040 (97.20) | .072 | 1.65 (0.95‐2.88) | .075 | 1.66 (0.95‐2.88) | .075 |
| rs3811463 T>C (HWE = 0.530) | |||||||
| TT | 364 (72.08) | 785 (73.36) | 1.00 | 1.00 | |||
| TC | 127 (25.15) | 260 (24.30) | 1.08 (0.86‐1.36) | .528 | 1.07 (0.85‐1.35) | .558 | |
| CC | 14 (2.77) | 25 (2.34) | 1.24 (0.64‐2.39) | .531 | 1.25 (0.64‐2.41) | .514 | |
| Additive | .530 | 1.07 (0.87‐1.31) | .530 | 1.07 (0.87‐1.32) | .525 | ||
| Dominant | 141 (27.92) | 285 (26.64) | .592 | 1.07 (0.84‐1.35) | .592 | 1.07 (0.84‐1.35) | .591 |
| Recessive | 491 (97.23) | 1045 (97.66) | .603 | 1.19 (0.61‐2.31) | .604 | 1.20 (0.62‐2.33) | .591 |
| rs34787247 G>A (HWE = 0.390) | |||||||
| GG | 353 (69.90) | 821 (76.73) | 1.00 | 1.00 | |||
| GA | 130 (25.74) | 229 (21.40) |
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| AA | 22 (4.36) | 20 (1.87) |
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| Additive | .0006 |
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| Dominant | 152 (30.10) | 249 (23.27) | .004 |
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| Recessive | 483 (95.64) | 1050 (98.13) | .004 |
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| rs11247957 G>A (HWE = 0.554) | |||||||
| GG | 481 (95.25) | 1032 (96.45) | 1.00 | 1.00 | |||
| GA | 24 (4.75) | 38 (3.55) | 1.38 (0.83‐2.32) | .219 | 1.39 (0.83‐2.33) | .218 | |
| AA | 0 (0.00) | 0 (0.00) | / | / | / | / | |
| Additive | .253 | 1.36 (0.80‐2.29) | .254 | 1.36 (0.81‐2.30) | .249 | ||
| Dominant | 24 (4.75) | 38 (3.55) | .253 | 1.36 (0.80‐2.29) | .254 | 1.36 (0.81‐2.30) | .249 |
| Combined effect of risk genotypes | |||||||
| 0 | 192 (38.02) | 465 (43.46) | 1.00 | 1.00 | |||
| 1 | 198 (39.21) | 404 (37.76) | 1.14 (0.93‐1.39) | .204 | 1.14 (0.93‐1.39) | .213 | |
| 2 | 82 (16.24) | 156 (14.58) | 1.22 (0.92‐1.63) | .173 | 1.21 (0.91‐1.62) | .188 | |
| 3 | 31 (6.14) | 44 (4.11) |
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| 4 | 2 (0.40) | 1 (0.09) | 4.64 (0.42‐51.33) | .210 | 4.54 (0.42‐50.24) | .217 | |
| Trend | .010 |
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| 0 | 192 (38.02) | 465 (43.46) | 1.00 | 1.00 | |||
| 1‐4 | 313 (61.98) | 605 (56.54) | .041 |
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Abbreviations: CI, confidence interval; OR, odds ratio.
Significance of bold values are the P values less than 0.05 or the 95% CIs excluded 1.
χ 2 test for genotype distributions between neuroblastoma patients and controls.
Adjusted for age and gender.
Risk genotypes were rs3811464 GA/AA, rs3811463 TC/CC, rs34787247 GA/AA and rs11247957 GA/AA.
Stratification analysis of risk genotypes with neuroblastoma susceptibility
| Variables | rs3811464 (cases/controls) | AOR (95% CI) |
| rs34787247 (cases/controls) | AOR (95% CI) |
| Combined risk genotypes (case/controls) | AOR (95% CI) |
| |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GG/GA | AA | GG | GA/AA | 0 | 1‐4 | |||||||
| Age, month | ||||||||||||
| ≤18 | 181/413 | 8/12 | 1.50 (0.60‐3.75) | .381 | 126/319 | 63/106 |
|
| 67/186 | 122/239 | 1.42 (0.99‐2.02) | .055 |
| >18 | 301/627 | 15/18 | 1.74 (0.87‐3.51) | .120 | 227/502 | 89/143 |
|
| 125/279 | 191/366 | 1.17 (0.89‐1.54) | .271 |
| Gender | ||||||||||||
| Females | 203/439 | 10/9 | 2.41 (0.97‐6.04) | .060 | 149/340 | 64/108 | 1.35 (0.94‐1.95) | .105 | 81/200 | 132/248 | 1.31 (0.94‐1.83) | .109 |
| Males | 279/601 | 13/21 | 1.34 (0.66‐2.72) | .415 | 204/481 | 88/141 |
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| 111/265 | 181/357 | 1.21 (0.91‐1.61) | .184 |
| Sites of origin | ||||||||||||
| Adrenal gland | 167/1040 | 6/30 | 1.28 (0.52‐3.13) | .593 | 124/821 | 49/249 | 1.31 (0.91‐1.88) | .147 | 69/465 | 104/605 | 1.17 (0.84‐1.62) | .359 |
| Retroperitoneal | 138/1040 | 9/30 |
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| 105/821 | 42/249 | 1.33 (0.90‐1.95) | .152 | 51/465 | 96/605 |
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| Mediastinum | 129/1040 | 6/30 | 1.67 (0.68‐4.11) | .262 | 94/821 | 41/249 | 1.43 (0.96‐2.12) | .078 | 55/465 | 80/605 | 1.13 (0.78‐1.62) | .528 |
| Others | 40/1040 | 2/30 | 1.67 (0.38‐7.27) | .494 | 27/821 | 15/249 | 1.84 (0.96‐3.51) | .066 | 15/465 | 27/605 | 1.38 (0.73‐2.63) | .326 |
| Clinical stages | ||||||||||||
| I + II + 4s | 237/1040 | 13/30 | 1.93 (0.99‐3.75) | .054 | 177/821 | 73/249 | 1.35 (1.00‐1.84) | .054 | 87/465 | 163/605 |
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| III + IV | 222/1040 | 10/30 | 1.59 (0.76‐3.31) | .216 | 162/821 | 70/249 |
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| 97/465 | 135/605 | 1.07 (0.80‐1.43) | .646 |
Abbreviations: AOR, adjusted odds ratio; CI, confidence interval.
Significance of bold values are the P values less than 0.05 or the 95% CIs excluded 1.
Adjusted for age and gender, omitting the corresponding stratify factor.
Association between inferred haplotypes of LIN28A gene and neuroblastoma susceptibility
| Haplotypes | Cases (N = 1010) | Controls (N = 2140) | Crude OR (95% CI) |
|
Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|
| No. (%) | No. (%) | |||||
| GTGG | 642 (63.56) | 1467 (68.55) | 1.00 | 1.00 | ||
| GTGA | 2 (0.20) | 0 (0.00) | / | / | / | / |
| GTAG | 129 (12.77) | 218 (10.19) |
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| GTAA | 1 (0.10) | 0 (0.00) | / | / | / | / |
| GCGG | 54 (5.35) | 123 (5.75) | 1.00 (0.72‐1.40) | .985 | 1.01 (0.72‐1.40) | .977 |
| GCGA | 2 (0.20) | 3 (0.14) | 1.52 (0.25‐9.14) | .645 | 1.51 (0.25‐9.04) | .655 |
| GCAG | 10 (0.99) | 18 (0.84) | 1.27 (0.58‐2.77) | .548 | 1.27 (0.58‐2.76) | .551 |
| GCAA | 1 (0.10) | 1 (0.05) | 2.29 (0.14‐36.59) | .559 | 2.29 (0.14‐36.71) | .558 |
| ATGG | 64 (6.34) | 124 (5.79) | 1.18 (0.86‐1.62) | .306 | 1.18 (0.86‐1.62) | .304 |
| ATGA | 0 (0.00) | 0 (0.00) | / | / | / | / |
| ATAG | 17 (1.68) | 21 (0.98) | 1.85 (0.97‐3.53) | .062 | 1.85 (0.97‐3.53) | .062 |
| ATAA | 0 (0) | 0 (0.00) | / | / | / | / |
| ACGG | 56 (5.54) | 121 (5.65) | 1.06 (0.76‐1.47) | .740 | 1.06 (0.76‐1.47) | .740 |
| ACGA | 16 (1.58) | 33 (1.54) | 1.11 (0.61‐2.03) | .740 | 1.11 (0.61‐2.04) | .728 |
| ACAG | 14 (1.39) | 10 (0.47) |
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| ACAA | 2 (0.20) | 1 (0.05) | 4.57 (0.41‐50.49) | .215 | 4.54 (0.41‐50.19) | .217 |
Abbreviations: CI, confidence interval; OR, odds ratio.
Significance of bold values are the P values less than 0.05 or the 95% CIs excluded 1.
The haplotype order was rs3811464, rs3811463, rs34787247 and rs11247957.
Obtained in logistic regression models with adjustment for age and gender.