| Literature DB >> 31747415 |
Hong Xue1,2,3,4, Xiaocui Tian1,2,3, Kaixin Zhang1,2,3, Wenbin Li1,2,3, Zhongying Qi1,2,3, Yanlong Fang1,2,3, Xiyu Li1,2,3, Yue Wang1,2,3, Jie Song1,2,3, Wen-Xia Li1,2,3, Hailong Ning1,2,3.
Abstract
Plant height (PH) is an important trait in soybean, as taller plants may have higher yields but may also be at risk for lodging. Many genes act jointly to influence PH throughout development. To map the quantitative trait loci (QTL) controlling PH, we used the unconditional variable method (UVM) and conditional variable method (CVM) to analyze PH data for a four-way recombinant inbred line (FW-RIL) population derived from the cross of (Kenfeng14 × Kenfeng15) × (Heinong48 × Kenfeng19). We identified 7, 8, 16, 19, 15, 27, 17, 27, 22, and 24 QTL associated with PH at 10 developmental stages, respectively. These QTL mapped to 95 genomic regions. Among these QTL, 9 were detected using UVM and CVM, and 89 and 66 were only detected by UVM or CVM, respectively. In total, 36 QTL controlling PH were detected at multiple developmental stages and these made unequal contributions to genetic variation throughout development. Among 19 novel regions discovered in our study, 7 could explain over 10% of the phenotypic variation and contained only one single QTL. The unconditional and conditional QTL detected here could be used in molecular design breeding across the whole developmental procedure.Entities:
Mesh:
Year: 2019 PMID: 31747415 PMCID: PMC6867651 DOI: 10.1371/journal.pone.0224897
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Development of plant height in the four environments.
E1 represents the May 3, 2014 sowing date; E2 represents the May 25, 2014 sowing date; E3 represents the May 9, 2015 sowing date; E4 represents the May 25, 2015 sowing date; The top, middle, and bottom bar with the same color show the maximum, mean, and minimum values for one stage; The color picture can be downloaded in dio 10.1371/journal.pone.0224897.
Analysis of variance and heritability of each stage based on unconditional and conditional variables across the four environments.
| Environment | Parameters | Traits | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DAE07 | DAE14 | DAE21 | DAE28 | DAE35 | DAE42 | DAE49 | DAE56 | DAE63 | DAE70 | ||||||||||||
| VG | 0.49 | ** | 1.85 | ** | 5.35 | ** | 15.05 | ** | 34.33 | ** | 68.54 | ** | 97.57 | ** | 156.23 | ** | 225.70 | ** | 324.65 | ** | |
| h2 | 0.53 | 0.88 | 0.89 | 0.85 | 0.90 | 0.88 | 0.90 | 0.95 | 0.96 | 0.97 | |||||||||||
| VG | 1.46 | ** | 3.47 | ** | 8.95 | ** | 26.61 | ** | 48.23 | ** | 65.33 | ** | 86.09 | ** | 151.56 | ** | 195.04 | ** | 260.44 | ** | |
| h2 | 0.77 | 0.93 | 0.91 | 0.92 | 0.92 | 0.86 | 0.91 | 0.94 | 0.95 | 0.97 | |||||||||||
| VG | 2.88 | ** | 12.36 | ** | 19.14 | ** | 46.97 | ** | 101.12 | ** | 114.68 | ** | 158.00 | ** | 208.97 | ** | 306.14 | ** | |||
| h2 | 0.92 | 0.94 | 0.88 | 0.92 | 0.91 | 0.92 | 0.95 | 0.94 | 0.97 | ||||||||||||
| VG | 3.89 | ** | 6.64 | ** | 14.61 | ** | 81.55 | ** | 68.95 | ** | 130.76 | ** | 126.04 | ** | 159.84 | ** | |||||
| h2 | 0.94 | 0.91 | 0.86 | 0.95 | 0.88 | 0.94 | 0.93 | 0.94 | |||||||||||||
| VE | 5.16 | ** | 1.31 | ** | 3.95 | ** | 20.95 | ** | 17.12 | ** | 60.34 | ** | 40.89 | ** | 42.68 | ** | 34.40 | ** | 19.10 | ** | |
| VG | 0.27 | ** | 0.77 | ** | 2.30 | ** | 5.41 | ** | 10.66 | ** | 15.82 | ** | 26.01 | ** | 63.23 | ** | 92.76 | ** | 193.27 | ** | |
| VGE | 0.73 | ** | 2.25 | ** | 6.03 | ** | 13.44 | ** | 42.11 | ** | 60.21 | ** | 81.25 | ** | 84.71 | ** | 104.61 | ** | 103.81 | ** | |
| h2 | 0.32 | 0.55 | 0.58 | 0.58 | 0.48 | 0.47 | 0.53 | 0.73 | 0.76 | 0.84 | |||||||||||
| DAE14|07 | DAE21|14 | DAE28|21 | DAE35|28 | DAE42|35 | DAE49|42 | DAE56|49 | DAE63|56 | DAE70|63 | |||||||||||||
| VG | 1.49 | ** | 1.80 | ** | 6.34 | ** | 17.45 | ** | 18.01 | ** | 39.37 | ** | 30.33 | ** | 44.07 | ** | 42.53 | ** | |||
| h2 | 0.84 | 0.74 | 0.76 | 0.84 | 0.70 | 0.87 | 0.83 | 0.89 | 0.93 | ||||||||||||
| VG | 1.87 | ** | 4.92 | ** | 12.20 | ** | 14.13 | ** | 27.95 | ** | 41.42 | ** | 44.95 | ** | 45.22 | ** | 12.91 | ** | |||
| h2 | 0.85 | 0.90 | 0.85 | 0.82 | 0.79 | 0.89 | 0.88 | 0.89 | 0.77 | ||||||||||||
| VG | 8.08 | ** | 6.54 | ** | 12.53 | ** | 60.18 | ** | 37.21 | ** | 95.71 | ** | 48.35 | ** | 44.67 | ** | |||||
| h2 | 0.93 | 0.75 | 0.81 | 0.89 | 0.86 | 0.95 | 0.89 | 0.93 | |||||||||||||
| VG | 2.56 | ** | 5.65 | ** | 45.62 | ** | 37.40 | ** | 74.77 | ** | 62.93 | ** | 59.41 | ** | |||||||
| h2 | 0.83 | 0.70 | 0.94 | 0.85 | 0.93 | 0.91 | 0.93 | ||||||||||||||
| VE | 2.15 | ** | 3.95 | ** | 21.44 | ** | 17.63 | ** | 63.14 | ** | 44.17 | ** | 43.56 | ** | 32.16 | ** | 18.97 | ** | |||
| VG | 0.03 | ** | 0.28 | ** | 0.35 | ** | 2.14 | ** | 0.00 | ** | 8.98 | ** | 16.41 | ** | 10.53 | ** | 8.86 | ** | |||
| VGE | 1.66 | ** | 4.06 | ** | 7.31 | ** | 20.29 | ** | 36.12 | ** | 39.32 | ** | 42.04 | ** | 38.73 | ** | 24.50 | ** | |||
| h2 | 0.05 | 0.19 | 0.13 | 0.27 | 0.00 | 0.44 | 0.58 | 0.49 | 0.81 | ||||||||||||
a E1 represents the May 3, 2014 sowing date; E2 represents the May 25, 2014 sowing date; E3 represents the May 9, 2015 sowing date; E4 represents the May 25, 2015 sowing date; Com. represents the combination of the four environments.
b VG, VE, and VGE represent the variance of genotypes, environments, and genotype×environment interaction effects, respectively; h2 represents heritability.
c DAE represents plant height at days after emerging.
d ** represents significant at < 0.0001 level.
Fig 2Phenotypic correlation coefficients among plant height at various stages.
E1 represents the May 3, 2014 sowing date; E2 represents the May 25, 2014 sowing date; E3 represents the May 9, 2015 sowing date; E4 represents the May 25, 2015 sowing date; DAE represents plant height at days after emerging. The color picture can be downloaded in dio 10.1371/journal.pone.0224897.
Fig 3QTL for plant height on 20 chromosomes in the four-way recombinant inbred lines.
The color picture can be downloaded in dio 10.1371/journal.pone.0224897.
Fig 4Frequency of QTL for plant height in 20 linkage groups.
The color picture can be downloaded in dio 10.1371/journal.pone.0224897.
Fig 5Frequency of QTL in the four environments.
E1 represents the May 3, 2014 sowing date; E2 represents the May 25, 2014 sowing date; E3 represents the May 9, 2015 sowing date; E4 represents the May 25, 2015 sowing date; The color picture can be downloaded in dio 10.1371/journal.pone.0224897.
Fig 6Temporal phenotypic variation explained ratio of QTL function on PH at multiple stages.
PVEU: phenotypic variation explanation ratio of unconditional QTL; PVEC: phenotypic variation explanation ratio of conditional QTL; DAE x: x days after emergence; The color picture can be downloaded in dio 10.1371/journal.pone.0224897.