Literature DB >> 31740795

Catalytic site-selective substrate processing within a tubular nanoreactor.

Yujia Qing1, Hiroko Tamagaki-Asahina1,2, Sandra A Ionescu1, Mira D Liu1,3,4, Hagan Bayley5.   

Abstract

Chemists have long sought the ability to modify molecules precisely when presented with several sites of similar reactivity. We reasoned that the confinement of substrates within nanostructures might permit site-selective reactions unachievable in bulk solution, even with sophisticated reagents. In particular, the stretching and alignment of polymers within nanotubes might allow site-specific cleavage or modification. To explore this proposition, macromolecular disulfide substrates were elongated within members of a collection of tubular protein nanoreactors, which contained cysteine residues positioned at different locations along the length of each tube. For each nanoreactor, we defined the reactive location by using a set of polymer substrates (site-selectivity) and which of the two sulfur atoms was attacked (regioselectivity), and found that disulfide interchange occurs with atomic precision. Our strategy has potential for the selective processing of a wide variety of biomacromolecules, and the chemistry and substrates might be generalized yet further by using alternative nanotubes.

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Year:  2019        PMID: 31740795      PMCID: PMC7100555          DOI: 10.1038/s41565-019-0579-7

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  29 in total

Review 1.  How proteins form disulfide bonds.

Authors:  Matthieu Depuydt; Joris Messens; Jean-Francois Collet
Journal:  Antioxid Redox Signal       Date:  2011-03-31       Impact factor: 8.401

2.  Removable directing groups in organic synthesis and catalysis.

Authors:  Géraldine Rousseau; Bernhard Breit
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-01       Impact factor: 15.336

Review 3.  Enzymatic site-selectivity enabled by structure-guided directed evolution.

Authors:  Jian-Bo Wang; Guangyue Li; Manfred T Reetz
Journal:  Chem Commun (Camb)       Date:  2017-04-04       Impact factor: 6.222

4.  Directional control of a processive molecular hopper.

Authors:  Yujia Qing; Sandra A Ionescu; Gökçe Su Pulcu; Hagan Bayley
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

5.  Regioselective control of aromatic halogenation reactions in carbon nanotube nanoreactors.

Authors:  Scott A Miners; Graham A Rance; Andrei N Khlobystov
Journal:  Chem Commun (Camb)       Date:  2013-06-21       Impact factor: 6.222

6.  Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures.

Authors:  A G Murzin; A M Lesk; C Chothia
Journal:  J Mol Biol       Date:  1994-03-11       Impact factor: 5.469

7.  Template Synthesis of Linear-Chain Nanodiamonds Inside Carbon Nanotubes from Bridgehead-Halogenated Diamantane Precursors.

Authors:  Yusuke Nakanishi; Haruka Omachi; Natalie A Fokina; Peter R Schreiner; Ryo Kitaura; Jeremy E P Dahl; Robert M K Carlson; Hisanori Shinohara
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-12       Impact factor: 15.336

8.  Protecting-Group-Free Site-Selective Reactions in a Metal-Organic Framework Reaction Vessel.

Authors:  Michael T Huxley; Alexandre Burgun; Hanieh Ghodrati; Campbell J Coghlan; Anthony Lemieux; Neil R Champness; David M Huang; Christian J Doonan; Christopher J Sumby
Journal:  J Am Chem Soc       Date:  2018-05-14       Impact factor: 15.419

9.  Glutaredoxins employ parallel monothiol-dithiol mechanisms to catalyze thiol-disulfide exchanges with protein disulfides.

Authors:  Ashwinie A Ukuwela; Ashley I Bush; Anthony G Wedd; Zhiguang Xiao
Journal:  Chem Sci       Date:  2017-12-06       Impact factor: 9.825

10.  Forcing the reversibility of a mechanochemical reaction.

Authors:  Amy E M Beedle; Marc Mora; Colin T Davis; Ambrosius P Snijders; Guillaume Stirnemann; Sergi Garcia-Manyes
Journal:  Nat Commun       Date:  2018-08-08       Impact factor: 14.919

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  5 in total

1.  Triggered Assembly of a DNA-Based Membrane Channel.

Authors:  Conor Lanphere; Jonah Ciccone; Adam Dorey; Nora Hagleitner-Ertuğrul; Denis Knyazev; Shozeb Haider; Stefan Howorka
Journal:  J Am Chem Soc       Date:  2022-03-07       Impact factor: 15.419

2.  Profiling single-molecule reaction kinetics under nanopore confinement.

Authors:  Wei Liu; Zhong-Lin Yang; Chao-Nan Yang; Yi-Lun Ying; Yi-Tao Long
Journal:  Chem Sci       Date:  2022-03-14       Impact factor: 9.825

3.  A reversibly gated protein-transporting membrane channel made of DNA.

Authors:  Swarup Dey; Adam Dorey; Leeza Abraham; Yongzheng Xing; Irene Zhang; Fei Zhang; Stefan Howorka; Hao Yan
Journal:  Nat Commun       Date:  2022-04-28       Impact factor: 17.694

4.  Remodeling nanodroplets into hierarchical mesoporous silica nanoreactors with multiple chambers.

Authors:  Yuzhu Ma; Hongjin Zhang; Runfeng Lin; Yan Ai; Kun Lan; Linlin Duan; Wenyao Chen; Xuezhi Duan; Bing Ma; Changyao Wang; Xiaomin Li; Dongyuan Zhao
Journal:  Nat Commun       Date:  2022-10-17       Impact factor: 17.694

5.  Towards explicit regulating-ion-transport: nanochannels with only function-elements at outer-surface.

Authors:  Qun Ma; Yu Li; Rongsheng Wang; Hongquan Xu; Qiujiao Du; Pengcheng Gao; Fan Xia
Journal:  Nat Commun       Date:  2021-03-10       Impact factor: 14.919

  5 in total

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