Literature DB >> 31738013

Prediction for global African swine fever outbreaks based on a combination of random forest algorithms and meteorological data.

Ruirui Liang1, Yi Lu1, Xiaosheng Qu2, Qiang Su1,3,4, Chunxia Li1, Sijing Xia1, Yongxin Liu1, Qiang Zhang5, Xin Cao6, Qin Chen1, Bing Niu1.   

Abstract

African swine fever (ASF) is a virulent infectious disease of pigs. As there is no effective vaccine and treatment method at present, it poses a great threat to the pig industry once it breaks out. In this paper, we used ASF outbreak data and the WorldClim database meteorological data and selected the CfsSubset Evaluator-Best First feature selection method combined with the random forest algorithms to construct an African swine fever outbreak prediction model. Subsequently, we also established a test set for data other than modelling, and the accuracy accuracy value range of the model on the independent test set was 76.02%-84.64%, which indicated that the modelling effect was better and the prediction accuracy was higher than previous estimates. In addition, logistic regression analysis was conducted on 12 features used for modelling and the ROC curves were drawn. The results showed that the bio14 features (precipitation of driest month) had the largest contribution to the outbreak of ASF, and it was speculated that the outbreak of the epidemic was significantly related to precipitation. Finally, we used this qualitative prediction model to build a global online prediction system for ASF outbreaks, in the hope that this study will help to decision-makers who can then take the relevant prevention and control measures in order to prevent the further spread of future epidemics of the disease.
© 2019 Blackwell Verlag GmbH.

Entities:  

Keywords:  African swine fever; WorldClim; global online prediction system; random forest algorithm

Year:  2019        PMID: 31738013     DOI: 10.1111/tbed.13424

Source DB:  PubMed          Journal:  Transbound Emerg Dis        ISSN: 1865-1674            Impact factor:   5.005


  15 in total

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