| Literature DB >> 31737161 |
Janou A Koskamp1, Sergio E Ruiz-Hernandez1, Devis Di Tommaso2, Alin Marin Elena3, Nora H De Leeuw1,4, Mariette Wolthers1.
Abstract
The dehydration of cations is generally accepted as the rate-limiting step in many processes. Molecular dynamics (MD) can be used to investigate the dynamics of water molecules around cations, and two different methods exist to obtain trajectory-based water dehydration frequencies. Here, these two different post-processing methods (direct method versus survival function) have been implemented to obtain calcium dehydration frequencies from a series of trajectories obtained using a range of accepted force fields. None of the method combinations reproduced the commonly accepted experimental water exchange frequency of 10-8.2 s-1. Instead, our results suggest much faster water dynamics, comparable with more accurate ab initio MD simulations and with experimental values obtained using neutron scattering techniques. We obtained the best agreement using the survival function method to characterize the water dynamics, and we show that different method combinations significantly affect the outcome. Our work strongly suggests that the fast water exchange kinetics around the calcium ions is not rate-limiting for reactions involving dissolved/solvated calcium. Our results further suggest that, for alkali and most of the earth alkali metals, mechanistic rate laws for growth, dissolution, and adsorption, which are based on the principle of rate-limiting cation dehydration, need careful reconsideration.Entities:
Year: 2019 PMID: 31737161 PMCID: PMC6849658 DOI: 10.1021/acs.jpcc.9b06403
Source DB: PubMed Journal: J Phys Chem C Nanomater Interfaces ISSN: 1932-7447 Impact factor: 4.126
Mean Residence Times Calculated Using either the Direct Method (MRTDM) or the Survival Function (MRTSF)a
| method | NH2O/Ca2+ | MRTDM (ps) | CN | MRTSF (ps) | ref | |
|---|---|---|---|---|---|---|
| SM-lj | 809 | 14.9 | 8.4 | 56 | 0.997 | this work |
| SPC/fw-tail | 809 | 116 | 7.0 | 333 | 0.999 | this work |
| SPC/fw-buck | 809 | 46 | 6.9 | 125 | 0.999 | this work |
| BLYP-D3/CP2K | 63 | 73.8 | 6.8 | this work | ||
| revPBE-D3/CP2K | 63 | 60.2 | 6.1 | this work | ||
| CPMD | 53 | 23.2 | 6 | ( | ||
| QM/MM-MD | 199 | 42.5 | 7.8 | ( | ||
| SPC/fw-tail | 200 | ( | ||||
| SPC/E/TIP4P | 158 | ( | ||||
| SM-buck | 2027 | 7.0 | ( | |||
| adsorption exp. | 6310 | [*][ | ||||
| IQUENS exp. | <100 | <100 | ( |
NH/Ca2+ is the number of water molecules per calcium in the simulation cell; the coordination number (CN) was used to normalize the exchange frequency for calculation of MRTDM, and the correlation coefficient R2 is for MRTSF. [*] Obtained using the exchange frequency of a molecule[4,5] using equation .
Figure 1(a) Probability distribution of different residence times (RT, black triangles) for first-shell water molecules obtained using SPC/fw-tail where the survival function is represented by the red and blue lines, which are two exponential fits. (b) Average distance between a coordinated water molecule and the calcium cation as a function of the residence time of that water molecule.
Figure 2Relative time a water molecule has H-bonds with bulk water molecules, during the 20 ps of each residence time (RT); the two gaussians represent the two different populations (short and long RT H2O).
Coordination Number of Calcium in Relation to Residence Time of the Water Molecules in the First Shell Using SPC/fw-tail
| first
shell configuration | |||
|---|---|---|---|
| CN | only long RT-water | 1 ≥ short RT-water | all |
| 6 | 1% | 1% | |
| 7 | 75% | 1% | 70% |
| 8 | 25% | 96% | 29% |
| 9 | 0% | 3% | 0.16% |
Figure 3Radial distribution function reflecting Ca2+-Owater coordination distances for the different models.
Figure 4Logarithm of the cation integration frequency versus the logarithm of the cation dehydration frequency. Circles: as determined from parabolic function fitted to the dehydration frequency;[11] triangles based on IQUENS measurements;[48,77] cross based on QM/MM-MD simulations and DM;[3] gray square based on ab initio calculations (BLYP-D3 functional) and DM (this study); diamond from classical MD using SF (this study).