Literature DB >> 31732575

Structural and Functional Dynamics of Soil Microbes following Spruce Beetle Infestation.

Gordon F Custer1,2,3, Linda T A van Diepen2,3, William L Stump4.   

Abstract

As the range of bark beetles expands into new forests and woodlands, the need to understand their effects on multiple trophic levels becomes increasingly important. To date, much attention has been paid to the aboveground processes affected by bark beetle infestation, with a focus on photoautotrophs and ecosystem level processes. However, indirect effects of bark beetle on belowground processes, especially the structure and function of soil microbiota remains largely a black box. Our study examined the impacts of bark beetle-induced tree mortality on soil microbial community structure and function using high-throughput sequencing of the soil bacterial and fungal communities and measurements of extracellular enzyme activities. The results suggest bark beetle infestation affected edaphic conditions through increased soil water content, pH, electrical conductivity, and carbon/nitrogen ratio and altered bulk and rhizosphere soil microbial community structure and function. Finally, increased enzymatic activity suggests heightened microbial decomposition following bark beetle infestation. With this increase in enzymatic activity, nutrients trapped in organic substrates may become accessible to seedlings and potentially alter the trajectory of forest regeneration. Our results indicate the need for incorporation of microbial processes into ecosystem level models.IMPORTANCE Belowground impacts of bark beetle infestation have not been explored as thoroughly as their aboveground counterparts. In order to accurately model impacts of bark beetle-induced tree mortality on carbon and nutrient cycling and forest regeneration, the intricacies of soil microbial communities must be examined. In this study, we investigated the structure and function of soil bacterial and fungal communities following bark beetle infestation. Our results show bark beetle infestation to impact soil conditions, as well as soil microbial community structure and function.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  Dendroctonuszzm321990; Picea engelmaniizzm321990; bacteria; bark beetle; community dynamics; ectomycorrhizae; extracellular enzymes; fungi; microbial ecology; microbial function

Year:  2020        PMID: 31732575      PMCID: PMC6974634          DOI: 10.1128/AEM.01984-19

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  29 in total

1.  Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

Authors:  Alma E Parada; David M Needham; Jed A Fuhrman
Journal:  Environ Microbiol       Date:  2015-10-14       Impact factor: 5.491

2.  Climate factors associated with historic spruce beetle (Coleoptera: Curculionidae) outbreaks in Utah and Colorado.

Authors:  Elizabeth G Hebertson; Michael J Jenkins
Journal:  Environ Entomol       Date:  2008-04       Impact factor: 2.377

Review 3.  Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change.

Authors:  Salvador Lladó; Rubén López-Mondéjar; Petr Baldrian
Journal:  Microbiol Mol Biol Rev       Date:  2017-04-12       Impact factor: 11.056

Review 4.  Forest microbiome: diversity, complexity and dynamics.

Authors:  Petr Baldrian
Journal:  FEMS Microbiol Rev       Date:  2017-03-01       Impact factor: 16.408

Review 5.  Structure and functions of the bacterial microbiota of plants.

Authors:  Davide Bulgarelli; Klaus Schlaeppi; Stijn Spaepen; Emiel Ver Loren van Themaat; Paul Schulze-Lefert
Journal:  Annu Rev Plant Biol       Date:  2013-01-30       Impact factor: 26.379

6.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

7.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Authors:  Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

8.  High-throughput fluorometric measurement of potential soil extracellular enzyme activities.

Authors:  Colin W Bell; Barbara E Fricks; Jennifer D Rocca; Jessica M Steinweg; Shawna K McMahon; Matthew D Wallenstein
Journal:  J Vis Exp       Date:  2013-11-15       Impact factor: 1.355

9.  Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.

Authors:  William Walters; Embriette R Hyde; Donna Berg-Lyons; Gail Ackermann; Greg Humphrey; Alma Parada; Jack A Gilbert; Janet K Jansson; J Gregory Caporaso; Jed A Fuhrman; Amy Apprill; Rob Knight
Journal:  mSystems       Date:  2015-12-22       Impact factor: 6.496

10.  Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors.

Authors:  Firoz Shah; César Nicolás; Johan Bentzer; Magnus Ellström; Mark Smits; Francois Rineau; Björn Canbäck; Dimitrios Floudas; Robert Carleer; Gerald Lackner; Jana Braesel; Dirk Hoffmeister; Bernard Henrissat; Dag Ahrén; Tomas Johansson; David S Hibbett; Francis Martin; Per Persson; Anders Tunlid
Journal:  New Phytol       Date:  2015-11-03       Impact factor: 10.151

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  2 in total

1.  Quantifying the immediate response of the soil microbial community to different grazing intensities on irrigated pastures.

Authors:  Emily Van Syoc; Shannon E Albeke; John Derek Scasta; Linda T A van Diepen
Journal:  Agric Ecosyst Environ       Date:  2021-12-08       Impact factor: 5.567

2.  Foliar Herbivory Reduces Rhizosphere Fungal Diversity and Destabilizes the Co-occurrence Network.

Authors:  Yu Shi; Kaoping Zhang; Tiantian Ma; Zhongyue Zhang; Ping Li; Zhenlong Xing; Jianqing Ding
Journal:  Front Microbiol       Date:  2022-03-08       Impact factor: 5.640

  2 in total

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