Literature DB >> 31723715

Validated Models of Immune Response to Virus Infection.

Amber M Smith1.   

Abstract

Viruses are a main cause of disease worldwide and many are without effective therapeutics or vaccines. A lack of understanding about how host responses work to control viral spread is one factor limiting effective management. How different immune components regulate infection dynamics is beginning to be better understood with the help of mathematical models. These models have been key in discriminating between hypotheses and in identifying rates of virus growth and clearance, dynamical control by different host factors and antivirals, and synergistic interactions during multi-pathogen infections. A recent focus in evaluating model predictions in the laboratory and clinic has illuminate the accuracy of models for a variety of viruses and highlighted the critical nature of theoretical approaches in virology. Here, I discuss recent model-driven exploration of host-pathogen interactions that have illustrated the importance of model validation in establishing the model's predictive capability and in defining new biology.

Entities:  

Year:  2018        PMID: 31723715      PMCID: PMC6853615          DOI: 10.1016/j.coisb.2018.10.005

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  58 in total

1.  Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.

Authors:  Ben Readhead; Jean-Vianney Haure-Mirande; Cory C Funk; Matthew A Richards; Paul Shannon; Vahram Haroutunian; Mary Sano; Winnie S Liang; Noam D Beckmann; Nathan D Price; Eric M Reiman; Eric E Schadt; Michelle E Ehrlich; Sam Gandy; Joel T Dudley
Journal:  Neuron       Date:  2018-06-21       Impact factor: 17.173

2.  A Universal Influenza Vaccine: The Strategic Plan for the National Institute of Allergy and Infectious Diseases.

Authors:  Emily J Erbelding; Diane J Post; Erik J Stemmy; Paul C Roberts; Alison Deckhut Augustine; Stacy Ferguson; Catharine I Paules; Barney S Graham; Anthony S Fauci
Journal:  J Infect Dis       Date:  2018-07-02       Impact factor: 5.226

3.  A previously undetected pathology of Zika virus infection.

Authors:  Kimberly M Christian; Hongjun Song; Guo-Li Ming
Journal:  Nat Med       Date:  2018-03-06       Impact factor: 53.440

4.  Frequent release of low amounts of herpes simplex virus from neurons: results of a mathematical model.

Authors:  Joshua T Schiffer; Laith Abu-Raddad; Karen E Mark; Jia Zhu; Stacy Selke; Amalia Magaret; Anna Wald; Lawrence Corey
Journal:  Sci Transl Med       Date:  2009-11-18       Impact factor: 17.956

5.  Effects of Influenza on Alveolar Macrophage Viability Are Dependent on Mouse Genetic Strain.

Authors:  Danielle Califano; Yoichi Furuya; Dennis W Metzger
Journal:  J Immunol       Date:  2018-05-14       Impact factor: 5.422

6.  Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2'-O-Methylation Mutant.

Authors:  Bianca Schmid; Melanie Rinas; Alessia Ruggieri; Eliana Gisela Acosta; Marie Bartenschlager; Antje Reuter; Wolfgang Fischl; Nathalie Harder; Jan-Philip Bergeest; Michael Flossdorf; Karl Rohr; Thomas Höfer; Ralf Bartenschlager
Journal:  PLoS Pathog       Date:  2015-12-31       Impact factor: 6.823

7.  A Critical, Nonlinear Threshold Dictates Bacterial Invasion and Initial Kinetics During Influenza.

Authors:  Amber M Smith; Amanda P Smith
Journal:  Sci Rep       Date:  2016-12-15       Impact factor: 4.379

Review 8.  Mathematical Models for Immunology: Current State of the Art and Future Research Directions.

Authors:  Raluca Eftimie; Joseph J Gillard; Doreen A Cantrell
Journal:  Bull Math Biol       Date:  2016-10-06       Impact factor: 1.758

9.  Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach.

Authors:  Arturo Blazquez-Navarro; Thomas Schachtner; Ulrik Stervbo; Anett Sefrin; Maik Stein; Timm H Westhoff; Petra Reinke; Edda Klipp; Nina Babel; Avidan U Neumann; Michal Or-Guil
Journal:  PLoS Comput Biol       Date:  2018-05-10       Impact factor: 4.475

10.  Investigating Functional Roles for Positive Feedback and Cellular Heterogeneity in the Type I Interferon Response to Viral Infection.

Authors:  Sivan Leviyang; Igor Griva
Journal:  Viruses       Date:  2018-09-21       Impact factor: 5.048

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  6 in total

1.  A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.

Authors:  T J Sego; Josua O Aponte-Serrano; Juliano Ferrari Gianlupi; Samuel R Heaps; Kira Breithaupt; Lutz Brusch; Jessica Crawshaw; James M Osborne; Ellen M Quardokus; Richard K Plemper; James A Glazier
Journal:  PLoS Comput Biol       Date:  2020-12-21       Impact factor: 4.475

Review 2.  Leveraging Computational Modeling to Understand Infectious Diseases.

Authors:  Adrianne L Jenner; Rosemary A Aogo; Courtney L Davis; Amber M Smith; Morgan Craig
Journal:  Curr Pathobiol Rep       Date:  2020-09-24

3.  Mathematical Modeling Finds Disparate Interferon Production Rates Drive Strain-Specific Immunodynamics during Deadly Influenza Infection.

Authors:  Emily E Ackerman; Jordan J A Weaver; Jason E Shoemaker
Journal:  Viruses       Date:  2022-04-27       Impact factor: 5.818

4.  Incorporating Time Delays in the Mathematical Modelling of the Human Immune Response in Viral Infections.

Authors:  Gabrielle Dagasso; Joanna Urban; Mila Kwiatkowska
Journal:  Procedia Comput Sci       Date:  2021-06-10

5.  Analysis of the initiation of viral infection under flow conditions with applications to transmission in feed.

Authors:  Vladimir P Zhdanov; Joshua A Jackman
Journal:  Biosystems       Date:  2020-06-09       Impact factor: 1.973

6.  Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.

Authors:  Josua O Aponte-Serrano; Jordan J A Weaver; T J Sego; James A Glazier; Jason E Shoemaker
Journal:  PLoS Comput Biol       Date:  2021-10-25       Impact factor: 4.475

  6 in total

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