Literature DB >> 29937276

Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.

Ben Readhead1, Jean-Vianney Haure-Mirande2, Cory C Funk3, Matthew A Richards3, Paul Shannon3, Vahram Haroutunian4, Mary Sano5, Winnie S Liang6, Noam D Beckmann7, Nathan D Price3, Eric M Reiman8, Eric E Schadt9, Michelle E Ehrlich10, Sam Gandy11, Joel T Dudley12.   

Abstract

Investigators have long suspected that pathogenic microbes might contribute to the onset and progression of Alzheimer's disease (AD) although definitive evidence has not been presented. Whether such findings represent a causal contribution, or reflect opportunistic passengers of neurodegeneration, is also difficult to resolve. We constructed multiscale networks of the late-onset AD-associated virome, integrating genomic, transcriptomic, proteomic, and histopathological data across four brain regions from human post-mortem tissue. We observed increased human herpesvirus 6A (HHV-6A) and human herpesvirus 7 (HHV-7) from subjects with AD compared with controls. These results were replicated in two additional, independent and geographically dispersed cohorts. We observed regulatory relationships linking viral abundance and modulators of APP metabolism, including induction of APBB2, APPBP2, BIN1, BACE1, CLU, PICALM, and PSEN1 by HHV-6A. This study elucidates networks linking molecular, clinical, and neuropathological features with viral activity and is consistent with viral activity constituting a general feature of AD.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alzheimer's disease; HHV-6A; HHV-6B; HHV-7; Roseolovirus; human herpesvirus; integrative genomics; multiscale networks; network biology; systems biology

Mesh:

Substances:

Year:  2018        PMID: 29937276      PMCID: PMC6551233          DOI: 10.1016/j.neuron.2018.05.023

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  129 in total

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4.  Analysis of human herpesvirus 6 U3 gene, which is a positional homolog of human cytomegalovirus UL 24 gene.

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Journal:  Virology       Date:  1998-09-15       Impact factor: 3.616

5.  Strategies for aggregating gene expression data: the collapseRows R function.

Authors:  Jeremy A Miller; Chaochao Cai; Peter Langfelder; Daniel H Geschwind; Sunil M Kurian; Daniel R Salomon; Steve Horvath
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6.  Genotype imputation with thousands of genomes.

Authors:  Bryan Howie; Jonathan Marchini; Matthew Stephens
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7.  Activation of Sp1-mediated transcription by Rta of Epstein-Barr virus via an interaction with MCAF1.

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Journal:  Nucleic Acids Res       Date:  2005-11-28       Impact factor: 16.971

8.  Visualization of DNA G-quadruplexes in herpes simplex virus 1-infected cells.

Authors:  Sara Artusi; Rosalba Perrone; Sara Lago; Paolo Raffa; Enzo Di Iorio; Giorgio Palù; Sara N Richter
Journal:  Nucleic Acids Res       Date:  2016-10-27       Impact factor: 16.971

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

10.  Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.

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Journal:  Nat Genet       Date:  2013-10-27       Impact factor: 38.330

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  203 in total

1.  Novel methods for integration and visualization of genomics and genetics data in Alzheimer's disease.

Authors:  Nathan A Bihlmeyer; Emily Merrill; Yann Lambert; Gyan P Srivastava; Timothy W Clark; Bradley T Hyman; Sudeshna Das
Journal:  Alzheimers Dement       Date:  2019-03-29       Impact factor: 21.566

2.  Human Herpesvirus 6 Detection in Alzheimer's Disease Cases and Controls across Multiple Cohorts.

Authors:  Mary Alice Allnutt; Kory Johnson; David A Bennett; Sarah M Connor; Juan C Troncoso; Olga Pletnikova; Marilyn S Albert; Susan M Resnick; Sonja W Scholz; Philip L De Jager; Steven Jacobson
Journal:  Neuron       Date:  2020-01-23       Impact factor: 17.173

3.  The Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing.

Authors:  Alexander L Greninger; Samia N Naccache; Pia Pannaraj; Keith R Jerome; Jennifer Dien Bard; Jeanne W Ruderman
Journal:  J Clin Microbiol       Date:  2019-09-24       Impact factor: 5.948

4.  Herpes Viruses, Alzheimer's Disease, and Related Dementias: Unifying or Confusing Hypothesis?

Authors:  Avindra Nath
Journal:  Neurotherapeutics       Date:  2019-01       Impact factor: 7.620

Review 5.  'Evolutionary medicine' perspectives on Alzheimer's Disease: Review and new directions.

Authors:  Molly Fox
Journal:  Ageing Res Rev       Date:  2018-07-27       Impact factor: 10.895

Review 6.  Microglial memory of early life stress and inflammation: Susceptibility to neurodegeneration in adulthood.

Authors:  Paula Desplats; Ashley M Gutierrez; Marta C Antonelli; Martin G Frasch
Journal:  Neurosci Biobehav Rev       Date:  2019-11-05       Impact factor: 8.989

Review 7.  Alzheimer Disease: An Update on Pathobiology and Treatment Strategies.

Authors:  Justin M Long; David M Holtzman
Journal:  Cell       Date:  2019-09-26       Impact factor: 41.582

Review 8.  Can infections trigger alpha-synucleinopathies?

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Journal:  Prog Mol Biol Transl Sci       Date:  2019-07-03       Impact factor: 3.622

9.  Are infections seeding some cases of Alzheimer's disease?

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Journal:  Nature       Date:  2020-11       Impact factor: 49.962

10.  Increased expression of toll-like receptor 3, an anti-viral signaling molecule, and related genes in Alzheimer's disease brains.

Authors:  Douglas G Walker; Tiffany M Tang; Lih-Fen Lue
Journal:  Exp Neurol       Date:  2018-08-01       Impact factor: 5.330

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