Literature DB >> 31721442

Antibody Panel Based N-Glycan Imaging for N-Glycoprotein Biomarker Discovery.

Alyson P Black1, Peggi M Angel1, Richard R Drake1, Anand S Mehta1.   

Abstract

Antibody panel based N-glycan imaging is a novel platform for N-glycan analysis of immunocaptured proteins. N-glycosylation is a post-translational modification of pathophysiological importance and is often studied in the context of disease biomarkers. Determination of protein-specific N-glycosylation changes in patient samples has traditionally been laborious or limited to study of a single protein per analysis. This novel technique allows for the multiplexed analysis of N-glycoproteins from biofluids. Briefly, this platform consists of antibodies spotted in an array panel to a microscope slide, specific capture of glycoproteins from a biological sample, and then enzymatic release of N-glycans for analysis by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS). N-glycans are detected at each individual spot, allowing N-glycan information to easily be linked back to its protein carrier. Using this protocol, multiplexed analysis of N-glycosylation on serum glycoproteins can be performed. Human serum is discussed here, but this method has potential to be applied to other biofluids and to any glycoprotein that can be captured by a validated antibody.
© 2019 by John Wiley & Sons, Inc. Basic Protocol: Antibody panel based N-glycan imaging by MALDI MS Support Protocol: Confirmation of antibody capture by IR-labeled proteins. © 2019 John Wiley & Sons, Inc.

Entities:  

Keywords:  N-glycan; antibody panel; biomarker; mass spectrometry imaging

Year:  2019        PMID: 31721442      PMCID: PMC6859948          DOI: 10.1002/cpps.99

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  32 in total

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Journal:  Clin Chem       Date:  2015-10-19       Impact factor: 8.327

2.  Automated High-Throughput Permethylation for Glycosylation Analysis of Biologics Using MALDI-TOF-MS.

Authors:  Archana Shubhakar; Radoslaw P Kozak; Karli R Reiding; Louise Royle; Daniel I R Spencer; Daryl L Fernandes; Manfred Wuhrer
Journal:  Anal Chem       Date:  2016-08-15       Impact factor: 6.986

3.  Influence of solvents and detergents on matrix-assisted laser desorption/ionization mass spectrometry measurements of proteins and oligonucleotides.

Authors:  K O Börnsen; M A Gass; G J Bruin; J H von Adrichem; M C Biro; G M Kresbach; M Ehrat
Journal:  Rapid Commun Mass Spectrom       Date:  1997       Impact factor: 2.419

Review 4.  Glycans and glycoproteins as specific biomarkers for cancer.

Authors:  Muchena J Kailemia; Dayoung Park; Carlito B Lebrilla
Journal:  Anal Bioanal Chem       Date:  2016-09-03       Impact factor: 4.142

Review 5.  Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.

Authors:  L Renee Ruhaak; Gege Xu; Qiongyu Li; Elisha Goonatilleke; Carlito B Lebrilla
Journal:  Chem Rev       Date:  2018-03-19       Impact factor: 60.622

6.  In Situ Imaging of N-Glycans by MALDI Imaging Mass Spectrometry of Fresh or Formalin-Fixed Paraffin-Embedded Tissue.

Authors:  Richard R Drake; Thomas W Powers; Kim Norris-Caneda; Anand S Mehta; Peggi M Angel
Journal:  Curr Protoc Protein Sci       Date:  2018-08-03

7.  GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.

Authors:  Alessio Ceroni; Kai Maass; Hildegard Geyer; Rudolf Geyer; Anne Dell; Stuart M Haslam
Journal:  J Proteome Res       Date:  2008-03-01       Impact factor: 4.466

8.  Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples.

Authors:  Elizabeth S Hecht; Elizabeth H Scholl; S Hunter Walker; Amber D Taylor; William A Cliby; Alison A Motsinger-Reif; David C Muddiman
Journal:  J Proteome Res       Date:  2015-09-14       Impact factor: 4.466

9.  Glycosylation of plasma IgG in colorectal cancer prognosis.

Authors:  Evropi Theodoratou; Kujtim Thaçi; Felix Agakov; Maria N Timofeeva; Jerko Štambuk; Maja Pučić-Baković; Frano Vučković; Peter Orchard; Anna Agakova; Farhat V N Din; Ewan Brown; Pauline M Rudd; Susan M Farrington; Malcolm G Dunlop; Harry Campbell; Gordan Lauc
Journal:  Sci Rep       Date:  2016-06-15       Impact factor: 4.379

10.  Exploring serum and immunoglobulin G N-glycome as diagnostic biomarkers for early detection of breast cancer in Ethiopian women.

Authors:  Abrha G Gebrehiwot; Daniel Seifu Melka; Yimenashu Mamo Kassaye; Tufa Gemechu; Wajana Lako; Hiroshi Hinou; Shin-Ichiro Nishimura
Journal:  BMC Cancer       Date:  2019-06-17       Impact factor: 4.430

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  10 in total

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Authors:  Colin T McDowell; Xiaowei Lu; Anand S Mehta; Peggi M Angel; Richard R Drake
Journal:  Mass Spectrom Rev       Date:  2021-08-15       Impact factor: 10.946

2.  Enhancing Metabolite Coverage for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Through Multiple On-Tissue Chemical Derivatizations.

Authors:  Kelly C O'Neill; Maria Emilia Dueñas; Evan Larson; Trevor T Forsman; Young-Jin Lee
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3.  Modeling and integration of N-glycan biomarkers in a comprehensive biomarker data model.

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Review 4.  Mass Spectrometry Imaging of Fibroblasts: Promise and Challenge.

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Review 5.  Glycan Imaging Mass Spectrometry: Progress in Developing Clinical Diagnostic Assays for Tissues, Biofluids, and Cells.

Authors:  Calvin R K Blaschke; Colin T McDowell; Alyson P Black; Anand S Mehta; Peggi M Angel; Richard R Drake
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6.  Direct N-Glycosylation Profiling of Urine and Prostatic Fluid Glycoproteins and Extracellular Vesicles.

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7.  GlycoFibroTyper: A Novel Method for the Glycan Analysis of IgG and the Development of a Biomarker Signature of Liver Fibrosis.

Authors:  Danielle A Scott; Mengjun Wang; Stephane Grauzam; Sarah Pippin; Alyson Black; Peggi M Angel; Richard R Drake; Stephen Castellino; Yuko Kono; Don C Rockey; Anand S Mehta
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8.  Acute lyme disease IgG N-linked glycans contrast the canonical inflammatory signature.

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Review 9.  Mass Spectrometry Imaging Spatial Tissue Analysis toward Personalized Medicine.

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10.  Biomarkers for the Early Detection of Hepatocellular Carcinoma.

Authors:  Neehar D Parikh; Anand S Mehta; Amit G Singal; Timothy Block; Jorge A Marrero; Anna S Lok
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