| Literature DB >> 31721299 |
Ping Li1, Shuyuan Duan1, Adan Fu2.
Abstract
OBJECTIVE: This study aimed to investigate the predictive value of long noncoding RNA nuclear enriched abundant transcript 1 (lncRNA NEAT1) for acute ischemic stroke (AIS) risk and to explore the correlation of lncRNA NEAT1 with disease severity, inflammation, recurrence and target microRNAs in patients with AIS.Entities:
Keywords: acute ischemic stroke; inflammation; long noncoding RNA; nuclear enriched abundant transcript 1; recurrence-free survival
Mesh:
Substances:
Year: 2019 PMID: 31721299 PMCID: PMC7031604 DOI: 10.1002/jcla.23056
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Figure 1Study flow
Clinical characteristics of AIS patients and controls
| Items | AIS patients (N = 210) | Controls (N = 210) |
|
|---|---|---|---|
| Age (y), mean ± SD | 62.2 ± 13.0 | 60.5 ± 10.4 | .138 |
| Gender, No. (%) | .486 | ||
| Male | 159 (75.7) | 165 (78.6) | |
| Female | 51 (24.3) | 45 (21.4) | |
| BMI (kg/m2), mean ± SD | 24.8 ± 2.9 | 24.4 ± 2.6 | .234 |
| Smoke, No. (%) | .922 | ||
| No | 117 (55.7) | 118 (56.2) | |
| Yes | 93 (44.3) | 92 (43.8) | |
| Hypertension, No. (%) | .105 | ||
| No | 33 (15.7) | 46 (21.9) | |
| Yes | 177 (84.3) | 164 (78.1) | |
| Diabetes mellitus, No. (%) | .234 | ||
| No | 160 (76.2) | 170 (81.0) | |
| Yes | 50 (23.8) | 40 (19.0) | |
| Hyperlipidemia, No. (%) | .558 | ||
| No | 107 (51.0) | 113 (53.8) | |
| Yes | 103 (49.0) | 97 (46.2) | |
| Hyperuricemia, No. (%) | .532 | ||
| No | 139 (66.2) | 145 (69.0) | |
| Yes | 71 (33.8) | 65 (31.0) | |
| CKD, No. (%) | .157 | ||
| No | 176 (83.8) | 186 (88.6) | |
| Yes | 34 (16.2) | 24 (11.4) | |
| NIHSS score, mean ± SD | 8.3 ± 3.6 | – | – |
| Biochemical indexes, median (IQR) | |||
| CRP (mg/L) | 35.6 (27.5‐49.7) | – | – |
| TNF‐α (pg/mL) | 78.7 (56.2‐124.5) | – | – |
| IL‐1β (pg/mL) | 6.7 (4.6‐9.2) | – | – |
| IL‐6 (pg/mL) | 61.4 (49.9‐80.7) | – | – |
| IL‐8 (pg/mL) | 67.6 (50.2‐97.2) | – | – |
| IL‐10 (pg/mL) | 15.8 (11.2‐23.3) | – | – |
| IL‐17 (pg/mL) | 129.4 (82.7‐170.8) | – | – |
| IL‐22 (pg/mL) | 75.8 (54.6‐108.8) | – | – |
Comparison was determined by Student's t test or chi‐square test.
Abbreviations: AIS, acute ischemic stroke; BMI, body mass index; CKD, chronic kidney disease; CRP, C‐reactive protein; IL, interleukin; IQR, interquartile range; NIHSS, National Institute of Health Stroke Scale; SD, standard deviation; TNF‐α, tumor necrosis factor‐α.
Figure 2LncRNA NEAT1 expression in AIS patients and controls. LncRNA NEAT1 expression detected by qPCR in AIS patients and controls (A). Predictive value of lncRNA NEAT1 for AIS risk evaluated by ROC curve (B). Comparison between two groups was determined by Wilcoxon rank sum test. LncRNA NEAT1, long noncoding RNA nuclear enriched abundant transcript 1; AIS, acute ischemic stroke; qPCR, quantitative polymerase chain reaction; ROC curve, receiver operating characteristic curve. P < .05 was considered significant
Correlation of lncRNA NEAT1 with continuous variables in AIS patients
| Items | LncRNA NEAT1 relative expression | |
|---|---|---|
|
| Correlation coefficient ( | |
| Age | .611 | .035 |
| BMI | .583 | −.038 |
| NIHSS score | <.001 | .503 |
| CRP | <.001 | .385 |
| TNF‐α | .001 | .228 |
| IL‐1β | .431 | .055 |
| IL‐6 | <.001 | .275 |
| IL‐8 | .018 | .163 |
| IL‐10 | <.001 | −.256 |
| IL‐17 | .390 | .060 |
| IL‐22 | .002 | .218 |
Correlation was determined by Spearman's rank correlation test.
Abbreviations: AIS, acute ischemic stroke; BMI, body mass index; CRP, C‐reactive protein; IL, interleukin; lncRNA, long non‐coding RNA; NIHSS, National Institute of Health stroke scale; SD, standard deviation; TNF‐α, tumor necrosis factor‐α.
Correlation of lncRNA NEAT1 with categorical variables in AIS patients
| Items | LncRNA NEAT1 expression |
| |
|---|---|---|---|
| High | Low | ||
| Gender, No. (%) | .148 | ||
| Male | 75 (47.2) | 84 (52.8) | |
| Female | 30 (58.8) | 21 (41.2) | |
| Smoke, No. (%) | .071 | ||
| No | 65 (55.6) | 52 (44.4) | |
| Yes | 40 (43.0) | 53 (57.0) | |
| Hypertension, No. (%) | .850 | ||
| No | 16 (48.5) | 17 (51.5) | |
| Yes | 89 (50.3) | 88 (49.7) | |
| Diabetes mellitus, No. (%) | .195 | ||
| No | 84 (52.5) | 76 (47.5) | |
| Yes | 21 (42.0) | 29 (58.0) | |
| Hyperlipidemia, No. (%) | .490 | ||
| No | 56 (52.3) | 51 (47.7) | |
| Yes | 49 (47.6) | 54 (52.4) | |
| Hyperuricemia, No. (%) | .307 | ||
| No | 73 (52.5) | 66 (47.5) | |
| Yes | 32 (45.1) | 39 (54.9) | |
| CKD, No. (%) | .261 | ||
| No | 85 (48.3) | 91 (51.7) | |
| Yes | 20 (58.8) | 14 (41.2) | |
Correlation was determined by chi‐square test.
Abbreviations: AIS, acute ischemic stroke; CKD, chronic kidney disease; lncRNA, long non‐coding RNA.
High or low expression was classified by the median value of LncRNA NEAT1 in AIS patients.
Figure 3LncRNA NEAT1 expression in recurrence/death patients and non‐recurrence survivors. LncRNA NEAT1 expression detected by qPCR in recurrence/death patients and non‐recurrence survivors (A). Predictive value of lncRNA NEAT1 for recurrence/death evaluated by ROC curves (B). Comparison between two groups was determined by Wilcoxon rank sum test. LncRNA NEAT1, long noncoding RNA nuclear enriched abundant transcript 1; qPCR, quantitative polymerase chain reaction; ROC curves, receiver operating characteristic curves. P < .05 was considered significant
Figure 4Correlation of lncRNA NEAT1 expression with RFS. Analysis of RFS in lncRNA NEAT1 high expression patients and lncRNA NEAT1 low expression patients. K‐M curves were used to display the RFS. Comparison between two groups was determined by log‐rank test. LncRNA NEAT1, long noncoding RNA nuclear enriched abundant transcript 1; RFS, recurrence‐free survival K‐M curves, Kaplan‐Meier curves. P < .05 was considered significant
Figure 5Association of lncRNA NEAT1 expression with several targeted genes. Correlation of lncRNA NEAT1 expression with miR‐124 expression in AIS patients (A). Correlation of lncRNA NEAT1 expression with miR‐125a expression in AIS patients (B). Correlation of lncRNA NEAT1 expression with miR‐146b expression in AIS patients (C). Correlation of lncRNA NEAT1 expression with target genes was assessed by Spearman's rank correlation test. LncRNA NEAT1, long noncoding RNA nuclear enriched abundant transcript 1; miR, microRNA; AIS, acute ischemic stroke. P < .05 was considered significant